Variant report

Variant	rs572951
Chromosome Location	chr4:125266508-125266509
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1078357	0.92[ASN][1000 genomes]
rs1078358	0.92[ASN][1000 genomes]
rs1078359	0.92[ASN][1000 genomes]
rs12641347	0.95[ASN][1000 genomes]
rs12643266	0.95[ASN][1000 genomes]
rs12643717	0.86[ASN][1000 genomes]
rs12644360	0.86[ASN][1000 genomes]
rs12644739	0.95[ASN][1000 genomes]
rs12645137	0.95[ASN][1000 genomes]
rs12645203	0.95[ASN][1000 genomes]
rs12645206	0.95[ASN][1000 genomes]
rs12645755	0.95[ASN][1000 genomes]
rs1915128	0.95[ASN][1000 genomes]
rs2005185	0.92[ASN][1000 genomes]
rs2125001	0.95[ASN][1000 genomes]
rs2893075	0.95[ASN][1000 genomes]
rs34300106	0.95[ASN][1000 genomes]
rs4292346	0.95[ASN][1000 genomes]
rs4413420	0.95[ASN][1000 genomes]
rs62319361	0.95[ASN][1000 genomes]
rs62319362	0.93[ASN][1000 genomes]
rs62321960	0.92[ASN][1000 genomes]
rs62321961	0.92[ASN][1000 genomes]
rs62321962	0.92[ASN][1000 genomes]
rs62321964	0.92[ASN][1000 genomes]
rs62321965	0.92[ASN][1000 genomes]
rs62321966	0.92[ASN][1000 genomes]
rs62321967	0.92[ASN][1000 genomes]
rs62321968	0.92[ASN][1000 genomes]
rs62321969	0.93[ASN][1000 genomes]
rs62321970	0.91[ASN][1000 genomes]
rs62321971	0.92[ASN][1000 genomes]
rs62321973	0.95[ASN][1000 genomes]
rs62321974	0.95[ASN][1000 genomes]
rs62321999	0.95[ASN][1000 genomes]
rs62322000	0.95[ASN][1000 genomes]
rs62322001	0.95[ASN][1000 genomes]
rs62322002	0.95[ASN][1000 genomes]
rs62322003	0.95[ASN][1000 genomes]
rs62322004	0.95[ASN][1000 genomes]
rs62322006	0.95[ASN][1000 genomes]
rs62322007	0.95[ASN][1000 genomes]
rs62322008	0.95[ASN][1000 genomes]
rs62322009	0.95[ASN][1000 genomes]
rs62322010	0.95[ASN][1000 genomes]
rs62322011	0.95[ASN][1000 genomes]
rs62322012	0.95[ASN][1000 genomes]
rs62322013	0.95[ASN][1000 genomes]
rs62322014	0.95[ASN][1000 genomes]
rs62322015	0.95[ASN][1000 genomes]
rs62322016	0.95[ASN][1000 genomes]
rs62322017	0.95[ASN][1000 genomes]
rs62322024	0.95[ASN][1000 genomes]
rs62322025	0.95[ASN][1000 genomes]
rs6834326	0.87[EUR][1000 genomes]
rs72676649	0.86[ASN][1000 genomes]
rs72676653	0.86[ASN][1000 genomes]
rs72676654	0.86[ASN][1000 genomes]
rs72676655	0.92[ASN][1000 genomes]
rs72676660	0.92[ASN][1000 genomes]
rs72676661	0.92[ASN][1000 genomes]
rs72676665	0.95[ASN][1000 genomes]
rs72676667	0.95[ASN][1000 genomes]
rs72676668	0.95[ASN][1000 genomes]
rs72676669	0.95[ASN][1000 genomes]
rs72676671	0.95[ASN][1000 genomes]
rs72676672	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv432624	chr4:125013395-125367740	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998024	chr4:125019384-125380876	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537241	chr4:125019384-125380876	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1015049	chr4:125037090-125393067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv595380	chr4:125265313-125336932	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125260400-125272200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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