Variant report

Variant	rs10786335
Chromosome Location	chr10:99098702-99098703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99051072..99053903-chr10:99096331..99098905,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213390	Chromatin interaction
ENSG00000269891	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10736116	0.83[EUR][1000 genomes]
rs10748694	0.84[EUR][1000 genomes]
rs10786324	0.84[EUR][1000 genomes]
rs10786326	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10786327	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10786329	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786330	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786332	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786333	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786334	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882883	0.80[EUR][1000 genomes]
rs10882884	0.80[EUR][1000 genomes]
rs10882889	0.83[EUR][1000 genomes]
rs10882891	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882894	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10882897	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882898	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882899	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11189120	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11189122	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11189127	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11189131	0.85[EUR][1000 genomes]
rs11189132	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11189137	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11189138	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12221430	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12413688	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12571098	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1334892	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1890966	0.96[ASN][1000 genomes]
rs3740512	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3740522	0.80[EUR][1000 genomes]
rs3781373	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4917766	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919087	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4919089	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4919090	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4919091	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61863767	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6584116	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7067835	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7072078	0.80[EUR][1000 genomes]
rs7076523	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7078288	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7080275	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7901853	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs945187	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs945189	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv825533	chr10:99070570-99115599	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv825534	chr10:99081505-99115599	Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99095200-99109400	Weak transcription	HSMMtube	muscle
2	chr10:99095200-99115200	Weak transcription	Gastric	stomach
3	chr10:99095400-99109400	Weak transcription	Liver	Liver
4	chr10:99095400-99115600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:99095400-99115600	Weak transcription	Left Ventricle	heart
6	chr10:99095400-99115600	Weak transcription	Right Ventricle	heart
7	chr10:99095600-99101800	Weak transcription	Pancreas	Pancrea
8	chr10:99097200-99104200	Weak transcription	K562	blood
9	chr10:99097400-99109600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:99097400-99115200	Weak transcription	A549	lung
11	chr10:99097400-99116000	Weak transcription	Hela-S3	cervix
12	chr10:99097600-99109400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:99097600-99109400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:99097600-99109600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:99097600-99115200	Weak transcription	NHEK	skin
16	chr10:99097600-99115800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:99098200-99098800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr10:99098200-99101400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:99098200-99108800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:99098200-99116200	Weak transcription	Brain Angular Gyrus	brain
21	chr10:99098400-99099200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr10:99098400-99099200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr10:99098400-99099400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr10:99098400-99101600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr10:99098400-99109200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr10:99098400-99109400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:99098400-99115200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:99098600-99099000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:99098600-99101800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:99098600-99114600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr10:99098600-99115400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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