Variant report

Variant	rs11189137
Chromosome Location	chr10:99095687-99095688
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99095023..99098677-chr10:99109833..99114591,4	MCF-7	breast:
2	chr10:99095422..99098240-chr10:99107284..99109589,2	MCF-7	breast:
3	chr10:99049975..99053832-chr10:99093402..99096465,5	K562	blood:
4	chr10:99069668..99072343-chr10:99094033..99096294,2	MCF-7	breast:
5	chr10:99094972..99096841-chr10:99101105..99102688,2	MCF-7	breast:
6	chr10:99067399..99070806-chr10:99092978..99095924,3	K562	blood:
7	chr10:99094747..99096526-chr10:99120700..99122428,2	MCF-7	breast:
8	chr10:99091712..99094616-chr10:99095407..99097123,2	K562	blood:
9	chr10:99048545..99053546-chr10:99092341..99096465,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000225850	Chromatin interaction
ENSG00000213390	Chromatin interaction
ENSG00000237169	Chromatin interaction
ENSG00000269891	Chromatin interaction
ENSG00000181274	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10736116	0.83[EUR][1000 genomes]
rs10748694	0.84[EUR][1000 genomes]
rs10786324	0.84[EUR][1000 genomes]
rs10786325	0.82[EUR][1000 genomes]
rs10786326	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10786327	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10786329	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786330	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786332	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786333	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786334	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786335	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882883	0.80[EUR][1000 genomes]
rs10882884	0.80[EUR][1000 genomes]
rs10882889	0.83[EUR][1000 genomes]
rs10882891	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882894	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882897	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882898	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882899	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11189120	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11189122	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11189127	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11189131	0.85[EUR][1000 genomes]
rs11189132	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11189138	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12221430	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12413688	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12571098	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1334892	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1890966	0.97[ASN][1000 genomes]
rs3740512	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3740522	0.80[EUR][1000 genomes]
rs3781373	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4917766	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4919087	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4919089	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4919090	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4919091	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61863767	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6584116	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7067835	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7072078	0.80[EUR][1000 genomes]
rs7076523	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7078288	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7080275	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7901853	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs945187	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs945189	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv825533	chr10:99070570-99115599	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv825534	chr10:99081505-99115599	Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99091400-99095800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr10:99091400-99095800	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr10:99093600-99095800	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr10:99094000-99095800	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr10:99094400-99096000	Active TSS	Primary hematopoietic stem cells	blood
6	chr10:99094800-99096600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:99095000-99095800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr10:99095200-99095800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:99095200-99095800	Weak transcription	HMEC	breast
10	chr10:99095200-99096000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr10:99095200-99096200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:99095200-99096400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr10:99095200-99096800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:99095200-99096800	Weak transcription	Ovary	ovary
15	chr10:99095200-99097200	Weak transcription	Esophagus	oesophagus
16	chr10:99095200-99097400	Enhancers	Stomach Mucosa	stomach
17	chr10:99095200-99097600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr10:99095200-99097600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:99095200-99109400	Weak transcription	HSMMtube	muscle
20	chr10:99095200-99115200	Weak transcription	Gastric	stomach
21	chr10:99095400-99095800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:99095400-99095800	Enhancers	Primary B cells from cord blood	blood
23	chr10:99095400-99096000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:99095400-99096000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr10:99095400-99096000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:99095400-99096000	Enhancers	NHEK	skin
27	chr10:99095400-99096400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:99095400-99096400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:99095400-99096600	Weak transcription	Adipose Nuclei	Adipose
30	chr10:99095400-99096600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr10:99095400-99096600	Weak transcription	Psoas Muscle	Psoas
32	chr10:99095400-99096600	Enhancers	Hela-S3	cervix
33	chr10:99095400-99096800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:99095400-99096800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr10:99095400-99096800	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:99095400-99096800	Weak transcription	Brain Substantia Nigra	brain
37	chr10:99095400-99096800	Weak transcription	Right Atrium	heart
38	chr10:99095400-99096800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:99095400-99096800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr10:99095400-99097000	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr10:99095400-99097200	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr10:99095400-99097200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr10:99095400-99097200	Weak transcription	Aorta	Aorta
44	chr10:99095400-99097200	Enhancers	Brain Anterior Caudate	brain
45	chr10:99095400-99097200	Weak transcription	Colonic Mucosa	Colon
46	chr10:99095400-99097200	Weak transcription	Lung	lung
47	chr10:99095400-99097200	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr10:99095400-99097200	Enhancers	HepG2	liver
49	chr10:99095400-99097400	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr10:99095400-99097400	Enhancers	A549	lung

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