Variant report

Variant	rs10786353
Chromosome Location	chr10:99274276-99274277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99272672..99275442-chr10:99278797..99280521,2	K562	blood:
2	chr10:99258633..99260480-chr10:99272393..99275026,3	MCF-7	breast:
3	chr10:99266125..99268587-chr10:99272459..99275467,3	MCF-7	breast:
4	chr10:99256475..99261666-chr10:99270366..99276913,12	MCF-7	breast:
5	chr10:99256742..99258905-chr10:99274226..99276132,2	K562	blood:
6	chr10:99262782..99264844-chr10:99274125..99276549,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165886	Chromatin interaction
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10882949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882950	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10882951	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11189249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11189257	0.81[ASN][1000 genomes]
rs11189258	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs12219922	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1890969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919104	0.80[YRI][hapmap]
rs7074482	0.88[CHB][hapmap];0.83[ASN][1000 genomes]
rs7089713	0.88[JPT][hapmap]
rs7341998	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs946984	0.84[JPT][hapmap]
rs946986	0.88[JPT][hapmap]
rs946987	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99260200-99276800	Weak transcription	Pancreas	Pancrea
2	chr10:99260800-99276800	Weak transcription	HSMM	muscle
3	chr10:99263600-99277800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:99263800-99277200	Weak transcription	HSMMtube	muscle
5	chr10:99263800-99277600	Weak transcription	Aorta	Aorta
6	chr10:99266200-99277600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:99266600-99277400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:99268000-99274400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:99268400-99278200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:99268600-99275000	Weak transcription	Fetal Kidney	kidney
11	chr10:99268600-99275200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:99268600-99275400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:99268600-99276600	Weak transcription	HMEC	breast
14	chr10:99268600-99277600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr10:99268600-99277600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:99268600-99277800	Weak transcription	NHLF	lung
17	chr10:99268800-99274600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:99268800-99274800	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:99268800-99276600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:99268800-99276600	Weak transcription	HUVEC	blood vessel
21	chr10:99268800-99277000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:99268800-99277400	Weak transcription	NH-A	brain
23	chr10:99268800-99277800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr10:99269000-99274600	Weak transcription	Brain Substantia Nigra	brain
25	chr10:99269000-99277000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr10:99269000-99277600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:99269400-99276600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:99270800-99286200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr10:99271200-99279200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr10:99271400-99277400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:99272200-99275200	Weak transcription	Liver	Liver
32	chr10:99272200-99277400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:99272200-99277400	Weak transcription	Brain Angular Gyrus	brain
34	chr10:99272200-99277600	Weak transcription	Colon Smooth Muscle	Colon
35	chr10:99272400-99274600	Weak transcription	HepG2	liver
36	chr10:99272400-99275200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:99272600-99274800	Weak transcription	Brain Anterior Caudate	brain
38	chr10:99272600-99274800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr10:99272600-99275400	Weak transcription	Fetal Stomach	stomach
40	chr10:99272600-99276800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr10:99272600-99277200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr10:99272600-99277400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:99272600-99277400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr10:99272600-99277600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:99272800-99275200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:99272800-99275200	Weak transcription	Right Atrium	heart
47	chr10:99272800-99275400	Weak transcription	Lung	lung
48	chr10:99272800-99276600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr10:99273000-99274800	Weak transcription	Adipose Nuclei	Adipose
50	chr10:99273000-99275800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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