Variant report

Variant	rs10882949
Chromosome Location	chr10:99278179-99278180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99275579..99277366-chr10:99277998..99279617,2	MCF-7	breast:
2	chr10:99262246..99264469-chr10:99277265..99278794,2	K562	blood:
3	chr10:99265449..99267822-chr10:99277534..99279101,2	K562	blood:
4	chr10:99275110..99276891-chr10:99277737..99279541,2	MCF-7	breast:
5	chr10:99275538..99279686-chr10:99333593..99336127,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10786353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882950	0.85[CEU][hapmap];0.82[GIH][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10882951	1.00[CEU][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11189249	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11189257	0.81[ASN][1000 genomes]
rs11189258	0.86[CHD][hapmap];0.81[ASN][1000 genomes]
rs12219922	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1890969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919104	0.84[YRI][hapmap]
rs7074482	0.86[CHD][hapmap];0.83[ASN][1000 genomes]
rs7341998	0.86[CHD][hapmap];0.81[ASN][1000 genomes]
rs946987	0.81[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10882949	ABCC2	cis	parietal	SCAN

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99268400-99278200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:99270800-99286200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr10:99271200-99279200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr10:99273800-99283200	Enhancers	Fetal Muscle Leg	muscle
5	chr10:99273800-99283200	Enhancers	Left Ventricle	heart
6	chr10:99274200-99279600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:99274200-99285000	Enhancers	Right Ventricle	heart
8	chr10:99274400-99280200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr10:99274600-99279800	Enhancers	Brain Substantia Nigra	brain
10	chr10:99274800-99279000	Enhancers	Fetal Muscle Trunk	muscle
11	chr10:99274800-99279400	Enhancers	Adipose Nuclei	Adipose
12	chr10:99275000-99293800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:99275400-99278600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:99275400-99279000	Enhancers	Lung	lung
15	chr10:99276000-99278400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:99276000-99278400	Enhancers	Spleen	Spleen
17	chr10:99276000-99284400	Weak transcription	HepG2	liver
18	chr10:99276600-99278600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:99276600-99278600	Enhancers	Stomach Smooth Muscle	stomach
20	chr10:99276600-99279000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:99276600-99279400	Enhancers	HMEC	breast
22	chr10:99276600-99279800	Enhancers	HUVEC	blood vessel
23	chr10:99276800-99278200	Enhancers	Pancreas	Pancrea
24	chr10:99276800-99278600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr10:99276800-99279000	Enhancers	Fetal Stomach	stomach
26	chr10:99276800-99279600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:99276800-99279800	Enhancers	Brain Hippocampus Middle	brain
28	chr10:99276800-99280000	Enhancers	HSMM	muscle
29	chr10:99276800-99281400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr10:99277000-99279400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr10:99277000-99279600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr10:99277000-99279800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:99277000-99280400	Enhancers	Fetal Lung	lung
34	chr10:99277200-99278200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:99277200-99278200	Enhancers	Duodenum Mucosa	Duodenum
36	chr10:99277200-99278400	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr10:99277200-99278400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:99277200-99278400	Enhancers	Ovary	ovary
39	chr10:99277200-99278600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:99277200-99278600	Enhancers	Right Atrium	heart
41	chr10:99277200-99279400	Enhancers	Brain Cingulate Gyrus	brain
42	chr10:99277200-99279800	Enhancers	Muscle Satellite Cultured Cells	--
43	chr10:99277200-99282800	Enhancers	HSMMtube	muscle
44	chr10:99277400-99278200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:99277400-99278400	Enhancers	H1 Cell Line	embryonic stem cell
46	chr10:99277400-99278400	Enhancers	Placenta	Placenta
47	chr10:99277400-99278600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:99277400-99278600	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr10:99277400-99278600	Enhancers	Hela-S3	cervix
50	chr10:99277400-99278800	Enhancers	Duodenum Smooth Muscle	Duodenum

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