Variant report

Variant	rs7074482
Chromosome Location	chr10:99286003-99286004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10786353	0.88[CHB][hapmap];0.83[ASN][1000 genomes]
rs10882949	0.86[CHD][hapmap];0.83[ASN][1000 genomes]
rs11189249	0.86[CHD][hapmap]
rs11189257	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11189258	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11592144	0.86[TSI][hapmap]
rs1890969	0.83[ASN][1000 genomes]
rs7341998	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7074482	C10orf12	cis	cerebellum	SCAN

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99270800-99286200	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr10:99275000-99293800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:99277800-99301800	Weak transcription	Gastric	stomach
4	chr10:99278000-99302600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:99278200-99298800	Weak transcription	Aorta	Aorta
6	chr10:99278400-99289600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:99278400-99301800	Weak transcription	Spleen	Spleen
8	chr10:99278600-99300200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:99279800-99287200	Enhancers	Lung	lung
10	chr10:99281200-99291400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:99281400-99302200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:99282200-99289400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:99282200-99289600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:99282200-99301800	Weak transcription	Pancreas	Pancrea
15	chr10:99282400-99291200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:99282400-99298200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:99282800-99292800	Weak transcription	HSMMtube	muscle
18	chr10:99282800-99299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:99284400-99287600	Enhancers	HepG2	liver
20	chr10:99284600-99286400	Enhancers	Psoas Muscle	Psoas
21	chr10:99284800-99289400	Weak transcription	Esophagus	oesophagus
22	chr10:99284800-99291800	Weak transcription	Brain Anterior Caudate	brain
23	chr10:99284800-99292000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:99285000-99286800	Weak transcription	Left Ventricle	heart
25	chr10:99285000-99289400	Weak transcription	Right Ventricle	heart
26	chr10:99285000-99291000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:99285000-99291400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:99285000-99293000	Weak transcription	Brain Substantia Nigra	brain
29	chr10:99285200-99289600	Weak transcription	Brain Hippocampus Middle	brain
30	chr10:99285200-99298600	Weak transcription	Right Atrium	heart
31	chr10:99285600-99286200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:99285600-99286200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr10:99285600-99286400	Enhancers	Adipose Nuclei	Adipose
34	chr10:99285800-99286200	Enhancers	Ovary	ovary
35	chr10:99285800-99286200	Enhancers	A549	lung
36	chr10:99285800-99286600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:99286000-99293600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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