Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10510020	0.93[ASN][1000 genomes]
rs10749217	0.93[AFR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10787676	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10787677	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10885939	0.94[ASN][1000 genomes]
rs10885940	0.94[ASN][1000 genomes]
rs1897520	0.93[ASN][1000 genomes]
rs2217632	0.92[ASN][1000 genomes]
rs2420285	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4529824	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs55674364	0.92[ASN][1000 genomes]
rs6585399	0.93[ASN][1000 genomes]
rs6585400	0.94[ASN][1000 genomes]
rs67933372	0.93[ASN][1000 genomes]
rs7070032	0.90[ASN][1000 genomes]
rs7074178	0.91[ASN][1000 genomes]
rs7077408	0.92[ASN][1000 genomes]
rs7087485	0.93[ASN][1000 genomes]
rs7088387	0.94[ASN][1000 genomes]
rs721181	0.93[ASN][1000 genomes]
rs764695	0.92[ASN][1000 genomes]
rs7898331	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7906587	0.94[ASN][1000 genomes]
rs7908185	0.92[ASN][1000 genomes]
rs7916123	0.92[ASN][1000 genomes]
rs989022	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118230800-118240600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:118231400-118239400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:118237600-118238800	Enhancers	Fetal Brain Male	brain
4	chr10:118238000-118240600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:118238200-118241800	Weak transcription	NHEK	skin
6	chr10:118238600-118249400	Weak transcription	HMEC	breast

Quick Search: