Variant report

Variant	rs2420285
Chromosome Location	chr10:118235730-118235731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10458761	0.95[EUR][1000 genomes]
rs10458762	0.95[EUR][1000 genomes]
rs10458763	0.98[EUR][1000 genomes]
rs10510020	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10510022	0.87[EUR][1000 genomes]
rs10510023	0.89[EUR][1000 genomes]
rs10749217	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10749219	0.93[EUR][1000 genomes]
rs10787676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787677	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787678	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10787679	0.91[EUR][1000 genomes]
rs10787680	0.95[EUR][1000 genomes]
rs10787685	0.87[EUR][1000 genomes]
rs10787706	0.87[EUR][1000 genomes]
rs10787707	0.87[EUR][1000 genomes]
rs10885939	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885940	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885941	0.98[EUR][1000 genomes]
rs10885964	0.85[EUR][1000 genomes]
rs10885965	0.85[EUR][1000 genomes]
rs10885981	0.87[EUR][1000 genomes]
rs11197694	0.95[EUR][1000 genomes]
rs11197707	0.91[EUR][1000 genomes]
rs11197711	0.89[EUR][1000 genomes]
rs11197712	0.89[EUR][1000 genomes]
rs11197728	0.89[EUR][1000 genomes]
rs11197729	0.87[EUR][1000 genomes]
rs11525278	0.89[EUR][1000 genomes]
rs11525290	0.89[EUR][1000 genomes]
rs11812945	0.98[EUR][1000 genomes]
rs11813385	0.98[EUR][1000 genomes]
rs11815357	0.95[EUR][1000 genomes]
rs11817431	0.87[EUR][1000 genomes]
rs11817441	0.87[EUR][1000 genomes]
rs11817470	0.87[EUR][1000 genomes]
rs12217917	0.87[EUR][1000 genomes]
rs12220096	0.89[EUR][1000 genomes]
rs12221345	0.87[EUR][1000 genomes]
rs12244215	0.87[EUR][1000 genomes]
rs12255203	0.89[EUR][1000 genomes]
rs12255207	0.89[EUR][1000 genomes]
rs12257773	0.91[EUR][1000 genomes]
rs12767361	0.87[EUR][1000 genomes]
rs17094828	0.93[EUR][1000 genomes]
rs17094927	0.87[EUR][1000 genomes]
rs1897520	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2099244	0.91[EUR][1000 genomes]
rs2217632	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2420293	0.91[EUR][1000 genomes]
rs2420294	0.89[EUR][1000 genomes]
rs2420295	0.91[EUR][1000 genomes]
rs2420296	0.91[EUR][1000 genomes]
rs2420297	0.87[EUR][1000 genomes]
rs2420299	0.87[EUR][1000 genomes]
rs2901107	0.91[EUR][1000 genomes]
rs4491137	0.87[EUR][1000 genomes]
rs4529824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4592354	0.91[EUR][1000 genomes]
rs4751597	0.87[EUR][1000 genomes]
rs4751598	0.89[EUR][1000 genomes]
rs4751599	0.89[EUR][1000 genomes]
rs4751600	0.89[EUR][1000 genomes]
rs4751601	0.89[EUR][1000 genomes]
rs4751975	0.95[EUR][1000 genomes]
rs4751982	0.89[EUR][1000 genomes]
rs55674364	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55989001	0.84[EUR][1000 genomes]
rs56755358	0.95[EUR][1000 genomes]
rs58380571	0.98[EUR][1000 genomes]
rs58623886	0.98[EUR][1000 genomes]
rs58834459	0.95[EUR][1000 genomes]
rs59690687	0.93[EUR][1000 genomes]
rs59775092	0.98[EUR][1000 genomes]
rs60072620	0.89[EUR][1000 genomes]
rs6585399	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6585400	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6585410	0.91[EUR][1000 genomes]
rs66492245	0.98[EUR][1000 genomes]
rs67570003	0.91[EUR][1000 genomes]
rs67933372	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7069129	0.89[EUR][1000 genomes]
rs7070032	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7070270	0.87[EUR][1000 genomes]
rs7074178	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7077408	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7080915	0.91[EUR][1000 genomes]
rs7081675	0.91[EUR][1000 genomes]
rs7087485	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7088387	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093179	0.89[EUR][1000 genomes]
rs7097727	0.91[EUR][1000 genomes]
rs7097841	0.91[EUR][1000 genomes]
rs7098296	0.91[EUR][1000 genomes]
rs721181	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72823429	0.93[EUR][1000 genomes]
rs764695	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7894218	0.85[EUR][1000 genomes]
rs7894682	0.87[EUR][1000 genomes]
rs7898331	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7906587	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908185	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7910824	0.87[EUR][1000 genomes]
rs7914091	0.84[EUR][1000 genomes]
rs7916123	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7922996	0.95[EUR][1000 genomes]
rs7923127	0.95[EUR][1000 genomes]
rs7923775	0.91[EUR][1000 genomes]
rs989022	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9943371	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118230800-118240600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:118231200-118238200	Strong transcription	NHEK	skin
3	chr10:118231200-118238600	Strong transcription	HMEC	breast
4	chr10:118231400-118239400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:118232400-118236400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:118232800-118236000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:118232800-118236400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:118232800-118237200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:118234600-118237200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:118235400-118236800	Enhancers	Fetal Stomach	stomach
11	chr10:118235600-118235800	Enhancers	Colon Smooth Muscle	Colon

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