Variant report

Variant	rs12257773
Chromosome Location	chr10:118219985-118219986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118219142..118221688-chr10:118222520..118224077,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10458761	0.91[EUR][1000 genomes]
rs10458762	0.91[EUR][1000 genomes]
rs10458763	0.89[EUR][1000 genomes]
rs10510020	0.88[EUR][1000 genomes]
rs10749219	0.84[EUR][1000 genomes]
rs10787676	0.91[EUR][1000 genomes]
rs10787677	0.91[EUR][1000 genomes]
rs10787679	0.82[EUR][1000 genomes]
rs10787680	0.86[EUR][1000 genomes]
rs10885940	0.88[EUR][1000 genomes]
rs10885941	0.89[EUR][1000 genomes]
rs11197694	0.86[EUR][1000 genomes]
rs11197707	0.82[EUR][1000 genomes]
rs11812945	0.89[EUR][1000 genomes]
rs11813385	0.89[EUR][1000 genomes]
rs11815357	0.91[EUR][1000 genomes]
rs12255203	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12255207	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17094828	0.84[EUR][1000 genomes]
rs1897520	0.97[EUR][1000 genomes]
rs2099244	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2217632	0.97[EUR][1000 genomes]
rs2420285	0.91[EUR][1000 genomes]
rs2420293	0.82[EUR][1000 genomes]
rs2420295	0.82[EUR][1000 genomes]
rs2420296	0.82[EUR][1000 genomes]
rs2901107	0.82[EUR][1000 genomes]
rs4529824	0.91[EUR][1000 genomes]
rs4592354	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4751975	0.86[EUR][1000 genomes]
rs55674364	0.97[EUR][1000 genomes]
rs56755358	0.86[EUR][1000 genomes]
rs58380571	0.89[EUR][1000 genomes]
rs58623886	0.89[EUR][1000 genomes]
rs58834459	0.86[EUR][1000 genomes]
rs59690687	0.93[EUR][1000 genomes]
rs59775092	0.89[EUR][1000 genomes]
rs60072620	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6585399	0.97[EUR][1000 genomes]
rs6585400	0.91[EUR][1000 genomes]
rs6585410	0.82[EUR][1000 genomes]
rs66492245	0.89[EUR][1000 genomes]
rs67570003	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67933372	0.97[EUR][1000 genomes]
rs7069129	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7070032	0.97[EUR][1000 genomes]
rs7074178	0.97[EUR][1000 genomes]
rs7077408	0.97[EUR][1000 genomes]
rs7080915	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7081675	0.82[EUR][1000 genomes]
rs7087485	0.97[EUR][1000 genomes]
rs7088387	0.88[EUR][1000 genomes]
rs7093179	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7097727	0.82[EUR][1000 genomes]
rs7097841	0.82[EUR][1000 genomes]
rs7098296	0.82[EUR][1000 genomes]
rs721181	0.97[EUR][1000 genomes]
rs72823429	0.84[EUR][1000 genomes]
rs764695	0.97[EUR][1000 genomes]
rs7898331	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7906587	0.88[EUR][1000 genomes]
rs7908185	0.97[EUR][1000 genomes]
rs7916123	0.88[EUR][1000 genomes]
rs7922996	0.86[EUR][1000 genomes]
rs7923127	0.86[EUR][1000 genomes]
rs7923775	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs989022	0.97[EUR][1000 genomes]
rs9943371	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118202000-118225400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:118202200-118224000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:118214200-118225200	Strong transcription	HMEC	breast
4	chr10:118216600-118223800	Weak transcription	Pancreas	Pancrea
5	chr10:118217000-118220400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:118217600-118222800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:118218000-118224200	Strong transcription	NHEK	skin

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