Variant report

Variant	rs17094828
Chromosome Location	chr10:118247055-118247056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10458761	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10458762	0.93[EUR][1000 genomes]
rs10458763	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10510020	0.95[EUR][1000 genomes]
rs10510022	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10510023	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10749219	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787676	0.93[EUR][1000 genomes]
rs10787677	0.93[EUR][1000 genomes]
rs10787679	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787680	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787685	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787706	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10787707	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10787708	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10885939	0.87[EUR][1000 genomes]
rs10885940	0.95[EUR][1000 genomes]
rs10885941	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10885964	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885965	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885981	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197690	0.82[ASN][1000 genomes]
rs11197694	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197707	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11197711	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197712	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197728	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11197729	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197742	0.85[GIH][hapmap]
rs11525278	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11525290	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11812945	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813385	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11815357	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11817431	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11817441	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11817470	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12217917	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12220096	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12221345	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12244215	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12244390	0.92[ASN][1000 genomes]
rs12255203	0.86[EUR][1000 genomes]
rs12255207	0.86[EUR][1000 genomes]
rs12257773	0.84[EUR][1000 genomes]
rs12264355	0.91[ASN][1000 genomes]
rs12761687	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12767361	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17094927	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1897520	0.86[EUR][1000 genomes]
rs2099244	0.84[EUR][1000 genomes]
rs2217632	0.86[EUR][1000 genomes]
rs2420285	0.93[EUR][1000 genomes]
rs2420293	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2420294	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2420295	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2420296	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2420297	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2420298	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2420299	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2901107	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2915767	0.85[GIH][hapmap]
rs4357611	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4454634	0.87[ASN][1000 genomes]
rs4491137	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4529824	0.93[EUR][1000 genomes]
rs4592354	0.84[EUR][1000 genomes]
rs4751597	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4751598	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4751599	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4751600	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4751601	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4751975	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4751982	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55674364	0.86[EUR][1000 genomes]
rs55989001	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56755358	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58380571	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58623886	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58834459	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59690687	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59775092	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60072620	0.86[EUR][1000 genomes]
rs6585399	0.86[EUR][1000 genomes]
rs6585400	0.93[EUR][1000 genomes]
rs6585410	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66492245	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67570003	0.84[EUR][1000 genomes]
rs67933372	0.86[EUR][1000 genomes]
rs7069129	0.86[EUR][1000 genomes]
rs7070032	0.86[EUR][1000 genomes]
rs7070270	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7074178	0.86[EUR][1000 genomes]
rs7077408	0.86[EUR][1000 genomes]
rs7080915	0.84[EUR][1000 genomes]
rs7081675	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7087485	0.86[EUR][1000 genomes]
rs7088387	0.95[EUR][1000 genomes]
rs7093179	0.81[EUR][1000 genomes]
rs7094130	0.82[ASN][1000 genomes]
rs7097727	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7097841	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7098296	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs721181	0.86[EUR][1000 genomes]
rs72823429	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs764695	0.86[EUR][1000 genomes]
rs7894218	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7894682	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7898331	0.85[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap];0.93[EUR][1000 genomes]
rs7906587	0.95[EUR][1000 genomes]
rs7908185	0.86[EUR][1000 genomes]
rs7910824	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7914091	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7916123	0.95[EUR][1000 genomes]
rs7922996	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923127	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923775	0.84[EUR][1000 genomes]
rs989022	0.86[EUR][1000 genomes]
rs9943371	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118238600-118249400	Weak transcription	HMEC	breast
2	chr10:118245800-118248200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:118246200-118247400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:118246200-118248200	Enhancers	Liver	Liver
5	chr10:118246400-118247200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:118246600-118247800	Enhancers	Fetal Stomach	stomach
7	chr10:118246600-118248000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:118246600-118248200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:118246600-118248400	Enhancers	Adipose Nuclei	Adipose
10	chr10:118246800-118247800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:118246800-118248800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:118247000-118247200	Enhancers	Fetal Brain Male	brain

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