Variant report

Variant	rs11197690
Chromosome Location	chr10:118240892-118240893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10458763	0.83[ASN][1000 genomes]
rs10749219	0.82[ASN][1000 genomes]
rs10787679	0.84[ASN][1000 genomes]
rs10787680	0.82[ASN][1000 genomes]
rs10787685	0.81[ASN][1000 genomes]
rs10885941	0.85[ASN][1000 genomes]
rs10885964	0.81[ASN][1000 genomes]
rs10885965	0.81[ASN][1000 genomes]
rs11197694	0.82[ASN][1000 genomes]
rs11197707	0.81[ASN][1000 genomes]
rs11197712	0.81[ASN][1000 genomes]
rs11812945	0.82[ASN][1000 genomes]
rs11813385	0.82[ASN][1000 genomes]
rs12244390	0.85[ASN][1000 genomes]
rs12761687	0.83[ASN][1000 genomes]
rs12767361	0.81[ASN][1000 genomes]
rs17094828	0.82[ASN][1000 genomes]
rs2420293	0.81[ASN][1000 genomes]
rs2420295	0.81[ASN][1000 genomes]
rs2420296	0.81[ASN][1000 genomes]
rs2901107	0.81[ASN][1000 genomes]
rs4751597	0.81[ASN][1000 genomes]
rs4751598	0.81[ASN][1000 genomes]
rs4751975	0.82[ASN][1000 genomes]
rs4751982	0.81[ASN][1000 genomes]
rs55989001	0.83[ASN][1000 genomes]
rs56755358	0.82[ASN][1000 genomes]
rs58380571	0.81[ASN][1000 genomes]
rs58623886	0.83[ASN][1000 genomes]
rs58834459	0.82[ASN][1000 genomes]
rs59775092	0.83[ASN][1000 genomes]
rs6585410	0.81[ASN][1000 genomes]
rs66492245	0.83[ASN][1000 genomes]
rs68098419	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7081675	0.81[ASN][1000 genomes]
rs7094130	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7894218	0.81[ASN][1000 genomes]
rs7910824	0.81[ASN][1000 genomes]
rs7922996	0.82[ASN][1000 genomes]
rs7923127	0.82[ASN][1000 genomes]
rs9943371	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118238200-118241800	Weak transcription	NHEK	skin
2	chr10:118238600-118249400	Weak transcription	HMEC	breast
3	chr10:118239400-118245800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:118240600-118245200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links