Variant report

Variant	rs6585399
Chromosome Location	chr10:118230916-118230917
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118230036..118230917-chr10:118280848..118281580,4	MCF-7	breast:
2	chr10:118230272..118231152-chr10:118249444..118250331,3	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10458761	0.89[EUR][1000 genomes]
rs10458762	0.89[EUR][1000 genomes]
rs10458763	0.86[EUR][1000 genomes]
rs10510020	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510023	0.81[EUR][1000 genomes]
rs10749217	0.99[ASN][1000 genomes]
rs10749219	0.82[EUR][1000 genomes]
rs10787676	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10787677	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10787678	0.93[ASN][1000 genomes]
rs10787679	0.80[EUR][1000 genomes]
rs10787680	0.84[EUR][1000 genomes]
rs10885939	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885940	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885941	0.86[EUR][1000 genomes]
rs11197694	0.84[EUR][1000 genomes]
rs11197711	0.81[EUR][1000 genomes]
rs11197712	0.81[EUR][1000 genomes]
rs11197728	0.81[EUR][1000 genomes]
rs11525278	0.81[EUR][1000 genomes]
rs11525290	0.81[EUR][1000 genomes]
rs11812945	0.86[EUR][1000 genomes]
rs11813385	0.86[EUR][1000 genomes]
rs11815357	0.89[EUR][1000 genomes]
rs12220096	0.81[EUR][1000 genomes]
rs12255203	1.00[EUR][1000 genomes]
rs12255207	1.00[EUR][1000 genomes]
rs12257773	0.97[EUR][1000 genomes]
rs17094828	0.86[EUR][1000 genomes]
rs1897520	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099244	0.97[EUR][1000 genomes]
rs2217632	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2420285	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4529824	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4592354	0.97[EUR][1000 genomes]
rs4751598	0.81[EUR][1000 genomes]
rs4751599	0.81[EUR][1000 genomes]
rs4751600	0.81[EUR][1000 genomes]
rs4751601	0.81[EUR][1000 genomes]
rs4751975	0.84[EUR][1000 genomes]
rs4751982	0.81[EUR][1000 genomes]
rs55674364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56755358	0.89[EUR][1000 genomes]
rs58380571	0.86[EUR][1000 genomes]
rs58623886	0.86[EUR][1000 genomes]
rs58834459	0.84[EUR][1000 genomes]
rs59690687	0.91[EUR][1000 genomes]
rs59775092	0.86[EUR][1000 genomes]
rs60072620	1.00[EUR][1000 genomes]
rs6585400	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66492245	0.86[EUR][1000 genomes]
rs67570003	0.97[EUR][1000 genomes]
rs67933372	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7069129	1.00[EUR][1000 genomes]
rs7070032	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7074178	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7077408	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7080915	0.97[EUR][1000 genomes]
rs7087485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7088387	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7093179	0.95[EUR][1000 genomes]
rs721181	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72823429	0.86[EUR][1000 genomes]
rs764695	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7898331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7906587	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7908185	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7914091	0.81[EUR][1000 genomes]
rs7916123	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7922996	0.84[EUR][1000 genomes]
rs7923127	0.84[EUR][1000 genomes]
rs7923775	0.97[EUR][1000 genomes]
rs989022	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9943371	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118224400-118231200	Weak transcription	Pancreas	Pancrea
2	chr10:118226600-118232000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:118226600-118232000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:118227000-118232000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:118228800-118231000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:118228800-118231400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:118229600-118232200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:118229800-118232200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:118230000-118231000	Enhancers	NHEK	skin
10	chr10:118230000-118231200	Weak transcription	HMEC	breast
11	chr10:118230400-118231600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:118230400-118232200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:118230600-118232800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr10:118230800-118231400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:118230800-118231400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:118230800-118232400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:118230800-118232800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr10:118230800-118240600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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