Variant report

Variant	rs10788628
Chromosome Location	chr10:90785376-90785377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10887876	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs10887878	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10887885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11202922	1.00[CEU][hapmap]
rs11202926	0.97[ASN][1000 genomes]
rs11202928	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202931	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1159120	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1324551	0.81[JPT][hapmap]
rs1468063	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1810763	0.83[ASN][1000 genomes]
rs2147418	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2296601	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2296602	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2296604	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2862830	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2862831	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2862832	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2862833	0.82[ASN][1000 genomes]
rs35150762	0.82[ASN][1000 genomes]
rs3752985	0.81[ASN][1000 genomes]
rs6586161	0.82[JPT][hapmap]
rs7097467	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7896789	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7911226	0.88[ASN][1000 genomes]
rs7914779	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7915235	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7920305	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs874144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs874145	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9325603	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs9658767	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9658769	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9658773	0.86[YRI][hapmap]
rs982764	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90754000-90789600	Weak transcription	A549	lung
2	chr10:90761800-90786200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:90762400-90785800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:90762600-90786000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:90766200-90785600	Strong transcription	GM12878-XiMat	blood
6	chr10:90767600-90786600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:90771600-90789600	Weak transcription	Brain Anterior Caudate	brain
8	chr10:90771800-90808600	Weak transcription	Primary T cells from cord blood	blood
9	chr10:90772400-90795000	Weak transcription	Placenta	Placenta
10	chr10:90772600-90789600	Weak transcription	Fetal Stomach	stomach
11	chr10:90772600-90791800	Weak transcription	Esophagus	oesophagus
12	chr10:90772600-90792000	Weak transcription	Colonic Mucosa	Colon
13	chr10:90772600-90795800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:90775000-90789400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr10:90775200-90789400	Weak transcription	NH-A	brain
16	chr10:90776200-90789400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:90776600-90792600	Weak transcription	Right Ventricle	heart
18	chr10:90776800-90789400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:90778000-90791200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:90779200-90791600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:90780200-90791400	Weak transcription	Spleen	Spleen
22	chr10:90780400-90786400	Weak transcription	Fetal Brain Male	brain
23	chr10:90780400-90789600	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:90780400-90790600	Weak transcription	Hela-S3	cervix
25	chr10:90780600-90786400	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:90780600-90789400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:90780600-90789400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:90780600-90789400	Weak transcription	Adipose Nuclei	Adipose
29	chr10:90780600-90789600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr10:90780600-90789600	Weak transcription	Brain Hippocampus Middle	brain
31	chr10:90780600-90789600	Weak transcription	Left Ventricle	heart
32	chr10:90780600-90789800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:90780600-90791000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:90780600-90791800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr10:90780600-90791800	Weak transcription	HSMM	muscle
36	chr10:90780600-90792000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr10:90780600-90792400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr10:90780800-90786200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr10:90780800-90791800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:90780800-90804200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr10:90781000-90786600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr10:90781000-90788800	Weak transcription	Fetal Lung	lung
43	chr10:90781000-90789400	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr10:90781000-90789600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr10:90781000-90790800	Weak transcription	Lung	lung
46	chr10:90781000-90791600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:90781000-90791800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:90781200-90791800	Weak transcription	Fetal Thymus	thymus
49	chr10:90781400-90790600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr10:90781600-90788600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links