Variant report

Variant	rs1159120
Chromosome Location	chr10:90759692-90759693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10788628	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10887876	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10887878	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10887885	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10887886	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11202922	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs11202926	0.85[ASN][1000 genomes]
rs11202928	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11202931	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1468063	1.00[CEU][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1926194	0.81[ASN][1000 genomes]
rs2147418	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147420	0.82[ASN][1000 genomes]
rs2148286	0.81[ASN][1000 genomes]
rs2148287	0.82[ASN][1000 genomes]
rs2182408	0.82[ASN][1000 genomes]
rs2234767	0.81[ASN][1000 genomes]
rs2296601	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2296602	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2296604	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2862830	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2862831	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2862832	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4406737	0.82[ASN][1000 genomes]
rs4406738	0.82[ASN][1000 genomes]
rs4934433	0.95[JPT][hapmap]
rs6586160	0.95[JPT][hapmap]
rs6586161	0.80[CEU][hapmap];0.95[JPT][hapmap]
rs7097467	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7896789	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7914779	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7915235	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7920305	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs874144	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs874145	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9325603	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9658685	0.83[ASN][1000 genomes]
rs9658767	1.00[CEU][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9658769	1.00[CEU][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9658773	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90751800-90768200	Weak transcription	Spleen	Spleen
2	chr10:90752000-90761600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:90752000-90770000	Weak transcription	Placenta	Placenta
4	chr10:90752000-90770800	Weak transcription	Esophagus	oesophagus
5	chr10:90752200-90760800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:90752200-90768400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:90752800-90773400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:90753000-90761400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:90753400-90761600	Weak transcription	Aorta	Aorta
10	chr10:90753800-90760400	Weak transcription	Brain Anterior Caudate	brain
11	chr10:90754000-90760400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:90754000-90760800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:90754000-90761000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:90754000-90761000	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:90754000-90761200	Weak transcription	NH-A	brain
16	chr10:90754000-90779400	Weak transcription	HepG2	liver
17	chr10:90754000-90789600	Weak transcription	A549	lung
18	chr10:90754200-90760400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:90754200-90761000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:90754200-90763200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:90754200-90767000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:90754400-90761200	Weak transcription	HSMM	muscle
23	chr10:90755400-90760800	Weak transcription	Fetal Thymus	thymus
24	chr10:90755400-90761200	Weak transcription	Thymus	Thymus
25	chr10:90755600-90761400	Weak transcription	Right Ventricle	heart
26	chr10:90755600-90762600	Weak transcription	Liver	Liver
27	chr10:90755600-90768200	Weak transcription	Lung	lung
28	chr10:90755600-90771400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:90755600-90776000	Weak transcription	Left Ventricle	heart
30	chr10:90755600-90776200	Weak transcription	Pancreas	Pancrea
31	chr10:90755800-90760200	Weak transcription	Adipose Nuclei	Adipose
32	chr10:90755800-90760400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:90755800-90760600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:90755800-90760600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:90755800-90762400	Weak transcription	Hela-S3	cervix
36	chr10:90756200-90760400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:90756200-90781800	Weak transcription	Stomach Mucosa	stomach
38	chr10:90756800-90760400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:90756800-90761000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr10:90756800-90769200	Weak transcription	Colonic Mucosa	Colon
41	chr10:90757000-90760400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:90757000-90760800	Weak transcription	Primary T cells from cord blood	blood
43	chr10:90757000-90760800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr10:90757000-90770800	Weak transcription	Primary B cells from cord blood	blood
45	chr10:90757200-90760400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr10:90757200-90760400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr10:90757200-90760600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:90757200-90760600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr10:90757200-90760600	Weak transcription	Small Intestine	intestine
50	chr10:90757200-90760800	Weak transcription	Primary monocytes fromperipheralblood	blood

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