The 2.0 version of rSNPBase

Variant report

Variant rs10789620
Chromosome Location chr11:107205426-107205427
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:107169400-107230000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr11:107173600-107231400 Weak transcription Brain Angular Gyrus brain
3 chr11:107179200-107229800 Weak transcription Psoas Muscle Psoas
4 chr11:107180000-107233200 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr11:107183400-107234400 Weak transcription HSMMtube muscle
6 chr11:107189800-107206200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr11:107190000-107223200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr11:107191200-107205800 Strong transcription Primary T cells fromperipheralblood blood
9 chr11:107191600-107208600 Strong transcription Primary T helper cells fromperipheralblood blood
10 chr11:107192000-107224200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr11:107192200-107207400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
12 chr11:107192200-107208200 Weak transcription Spleen Spleen
13 chr11:107192200-107223800 Weak transcription Brain Substantia Nigra brain
14 chr11:107192200-107225600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr11:107192200-107229000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr11:107192200-107232200 Weak transcription Esophagus oesophagus
17 chr11:107192400-107214600 Weak transcription Fetal Intestine Small intestine
18 chr11:107192600-107207400 Weak transcription Colonic Mucosa Colon
19 chr11:107193800-107209600 Weak transcription iPS-18 Cell Line embryonic stem cell
20 chr11:107193800-107229800 Weak transcription Right Ventricle heart
21 chr11:107193800-107237200 Weak transcription Gastric stomach
22 chr11:107194200-107213400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
23 chr11:107194400-107206200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr11:107194600-107208200 Weak transcription Lung lung
25 chr11:107194600-107208800 Weak transcription GM12878-XiMat blood
26 chr11:107194600-107221200 Weak transcription Rectal Smooth Muscle rectum
27 chr11:107194600-107235600 Weak transcription Aorta Aorta
28 chr11:107194800-107214800 Weak transcription Brain Anterior Caudate brain
29 chr11:107194800-107221000 Weak transcription Fetal Adrenal Gland Adrenal Gland
30 chr11:107194800-107221600 Weak transcription Brain Cingulate Gyrus brain
31 chr11:107194800-107223000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr11:107194800-107224000 Weak transcription Small Intestine intestine
33 chr11:107195000-107205800 Weak transcription HUVEC blood vessel
34 chr11:107195000-107223200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr11:107195000-107299200 Weak transcription Colon Smooth Muscle Colon
36 chr11:107195200-107206800 Weak transcription Fetal Muscle Leg muscle
37 chr11:107195200-107215200 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr11:107195200-107222000 Weak transcription Primary T killer naive cells fromperipheralblood blood
39 chr11:107195200-107224000 Weak transcription Thymus Thymus
40 chr11:107195200-107225800 Weak transcription HSMM muscle
41 chr11:107195200-107233000 Weak transcription Fetal Muscle Trunk muscle
42 chr11:107195600-107218800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
43 chr11:107195800-107220000 Weak transcription HUES48 Cell Line embryonic stem cell
44 chr11:107197000-107228200 Weak transcription Fetal Stomach stomach
45 chr11:107197600-107214800 Weak transcription Fetal Lung lung
46 chr11:107197800-107213400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr11:107197800-107215200 Weak transcription Rectal Mucosa Donor 29 rectum
48 chr11:107197800-107218800 Weak transcription Duodenum Mucosa Duodenum
49 chr11:107197800-107220800 Weak transcription Rectal Mucosa Donor 31 rectum
50 chr11:107198000-107219000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015