Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1031982	0.83[EUR][1000 genomes]
rs1031983	0.82[EUR][1000 genomes]
rs10502112	0.83[EUR][1000 genomes]
rs10789715	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890953	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10890955	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10890960	0.82[EUR][1000 genomes]
rs10890963	0.82[EUR][1000 genomes]
rs10890965	0.82[EUR][1000 genomes]
rs10890966	0.83[EUR][1000 genomes]
rs11212958	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11212983	0.82[EUR][1000 genomes]
rs11212984	0.82[EUR][1000 genomes]
rs11212985	0.82[EUR][1000 genomes]
rs11212988	0.83[EUR][1000 genomes]
rs11212989	0.82[EUR][1000 genomes]
rs11493855	0.80[EUR][1000 genomes]
rs11530739	0.82[EUR][1000 genomes]
rs1384113	0.83[EUR][1000 genomes]
rs1396912	0.83[EUR][1000 genomes]
rs1396913	0.83[EUR][1000 genomes]
rs1482040	0.83[EUR][1000 genomes]
rs1509732	0.83[EUR][1000 genomes]
rs2170455	0.80[EUR][1000 genomes]
rs4754387	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3322405	chr11:109020592-109021690	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109012000-109021200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:109012000-109021400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:109020200-109021200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:109020600-109021000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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