Variant report

Variant	rs1396913
Chromosome Location	chr11:109069019-109069020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1023937	0.91[EUR][1000 genomes]
rs1031982	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1031983	0.93[EUR][1000 genomes]
rs10502112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10789715	0.85[EUR][1000 genomes]
rs10789716	0.83[EUR][1000 genomes]
rs10789721	0.86[EUR][1000 genomes]
rs10890953	0.84[EUR][1000 genomes]
rs10890955	0.84[EUR][1000 genomes]
rs10890960	0.93[EUR][1000 genomes]
rs10890963	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10890965	0.93[EUR][1000 genomes]
rs10890966	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10890967	0.87[EUR][1000 genomes]
rs10890968	0.86[EUR][1000 genomes]
rs10890970	0.86[EUR][1000 genomes]
rs10890971	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10890972	0.86[EUR][1000 genomes]
rs10890973	0.86[EUR][1000 genomes]
rs10890974	0.93[EUR][1000 genomes]
rs10890977	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10890978	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10890979	0.86[EUR][1000 genomes]
rs10890980	0.86[EUR][1000 genomes]
rs11212958	0.84[EUR][1000 genomes]
rs11212983	0.93[EUR][1000 genomes]
rs11212984	0.93[EUR][1000 genomes]
rs11212985	0.93[EUR][1000 genomes]
rs11212987	0.94[ASN][1000 genomes]
rs11212988	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11212989	0.93[EUR][1000 genomes]
rs11212990	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11212996	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11213000	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11213001	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11213002	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11213003	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11213004	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11213007	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11213013	0.86[EUR][1000 genomes]
rs11213015	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11213016	0.86[EUR][1000 genomes]
rs11213018	0.86[EUR][1000 genomes]
rs11213025	0.86[EUR][1000 genomes]
rs11213026	0.85[EUR][1000 genomes]
rs11493855	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11518210	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11518315	0.92[ASN][1000 genomes]
rs11530739	0.93[EUR][1000 genomes]
rs11530741	0.86[EUR][1000 genomes]
rs12221986	0.87[EUR][1000 genomes]
rs12222616	0.86[EUR][1000 genomes]
rs12226597	0.86[EUR][1000 genomes]
rs12365943	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12422091	0.86[EUR][1000 genomes]
rs12786593	0.84[EUR][1000 genomes]
rs1384113	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1384114	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1396912	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1482040	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1482042	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1509732	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1817478	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1842704	0.86[EUR][1000 genomes]
rs1905079	0.86[EUR][1000 genomes]
rs1963981	0.87[EUR][1000 genomes]
rs2170455	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2220006	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2357422	0.90[EUR][1000 genomes]
rs2357425	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2357580	0.87[EUR][1000 genomes]
rs34126728	0.87[EUR][1000 genomes]
rs4753865	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4754385	0.86[EUR][1000 genomes]
rs4754386	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4754387	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4754391	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6589060	0.85[ASN][1000 genomes]
rs7109378	0.85[EUR][1000 genomes]
rs7114760	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs746592	0.88[ASN][1000 genomes]
rs7932349	0.86[EUR][1000 genomes]
rs7932475	0.86[EUR][1000 genomes]
rs7932840	0.86[EUR][1000 genomes]
rs7941330	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs922774	0.86[EUR][1000 genomes]
rs992975	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs993709	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109067200-109069600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr11:109068200-109069600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:109068200-109069600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:109068600-109069200	Enhancers	Primary hematopoietic stem cells	blood
5	chr11:109068800-109108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:109069000-109073200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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