Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1031982	0.94[ASN][1000 genomes]
rs10502112	0.96[ASN][1000 genomes]
rs10890963	0.98[ASN][1000 genomes]
rs10890966	0.97[ASN][1000 genomes]
rs11212988	0.98[ASN][1000 genomes]
rs11212990	0.89[ASN][1000 genomes]
rs11493855	0.94[ASN][1000 genomes]
rs11518315	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1384113	0.87[ASN][1000 genomes]
rs1384114	0.82[ASN][1000 genomes]
rs1396912	0.96[ASN][1000 genomes]
rs1396913	0.94[ASN][1000 genomes]
rs1482040	0.87[ASN][1000 genomes]
rs1482042	0.82[ASN][1000 genomes]
rs1509732	0.97[ASN][1000 genomes]
rs2220006	0.83[ASN][1000 genomes]
rs4753865	0.81[ASN][1000 genomes]
rs4754387	0.91[ASN][1000 genomes]
rs6589060	0.85[ASN][1000 genomes]
rs7114760	0.82[ASN][1000 genomes]
rs746592	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7941330	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1053898	chr11:109075527-109140982	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109068800-109108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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