Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1031982	0.91[ASN][1000 genomes]
rs10502112	0.90[ASN][1000 genomes]
rs10890963	0.89[ASN][1000 genomes]
rs10890966	0.90[ASN][1000 genomes]
rs10890978	0.90[CHB][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap]
rs11212987	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11212988	0.89[ASN][1000 genomes]
rs11212990	0.84[ASN][1000 genomes]
rs11213015	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs11493855	0.88[ASN][1000 genomes]
rs11518315	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1384113	0.84[ASN][1000 genomes]
rs1396912	0.90[ASN][1000 genomes]
rs1396913	0.88[ASN][1000 genomes]
rs1482040	0.84[ASN][1000 genomes]
rs1509732	0.89[ASN][1000 genomes]
rs1825164	0.83[EUR][1000 genomes]
rs4754387	0.85[ASN][1000 genomes]
rs6589060	0.96[ASN][1000 genomes]
rs7941330	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs746592	CPB2	trans	cerebellum	SCAN
rs746592	SLC7A5	trans	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109054200-109055000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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