Variant report
| Variant | rs11518315 |
|---|---|
| Chromosome Location | chr11:109082770-109082771 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1031982 | 0.93[ASN][1000 genomes] |
| rs10502112 | 0.94[ASN][1000 genomes] |
| rs10890963 | 0.96[ASN][1000 genomes] |
| rs10890966 | 0.96[ASN][1000 genomes] |
| rs11212987 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11212988 | 0.96[ASN][1000 genomes] |
| rs11212990 | 0.88[ASN][1000 genomes] |
| rs11213000 | 0.81[ASN][1000 genomes] |
| rs11213001 | 0.81[ASN][1000 genomes] |
| rs11213002 | 0.81[ASN][1000 genomes] |
| rs11213003 | 0.81[ASN][1000 genomes] |
| rs11213004 | 0.81[ASN][1000 genomes] |
| rs11213007 | 0.81[ASN][1000 genomes] |
| rs11493855 | 0.92[ASN][1000 genomes] |
| rs1384113 | 0.85[ASN][1000 genomes] |
| rs1384114 | 0.83[ASN][1000 genomes] |
| rs1396912 | 0.94[ASN][1000 genomes] |
| rs1396913 | 0.92[ASN][1000 genomes] |
| rs1482040 | 0.86[ASN][1000 genomes] |
| rs1482042 | 0.83[ASN][1000 genomes] |
| rs1509732 | 0.94[ASN][1000 genomes] |
| rs1825164 | 0.83[EUR][1000 genomes] |
| rs2220006 | 0.85[ASN][1000 genomes] |
| rs4753865 | 0.83[ASN][1000 genomes] |
| rs4754387 | 0.93[ASN][1000 genomes] |
| rs6589060 | 0.87[ASN][1000 genomes] |
| rs7114760 | 0.84[ASN][1000 genomes] |
| rs746592 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7941330 | 0.85[ASN][1000 genomes] |
| rs992975 | 0.81[ASN][1000 genomes] |
| rs993709 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040650 | chr11:108859584-109174553 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1053898 | chr11:109075527-109140982 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:109068800-109108600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
