Variant report

Variant	rs7941330
Chromosome Location	chr11:109039046-109039047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1031982	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10502112	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10890963	0.85[ASN][1000 genomes]
rs10890966	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10890978	0.86[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.81[TSI][hapmap]
rs11212987	0.83[ASN][1000 genomes]
rs11212988	0.85[ASN][1000 genomes]
rs11213015	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs11493855	0.81[ASN][1000 genomes]
rs11518315	0.85[ASN][1000 genomes]
rs1396912	0.85[ASN][1000 genomes]
rs1396913	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1509732	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4754387	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6589060	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs746592	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7941330	CPB2	trans	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109038600-109039200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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