Variant report

Variant	rs10890970
Chromosome Location	chr11:109117287-109117288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1023937	0.92[EUR][1000 genomes]
rs1031982	0.86[EUR][1000 genomes]
rs1031983	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10502112	0.86[EUR][1000 genomes]
rs10789721	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10890960	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10890963	0.85[EUR][1000 genomes]
rs10890965	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10890966	0.86[EUR][1000 genomes]
rs10890967	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10890968	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10890971	0.91[EUR][1000 genomes]
rs10890972	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10890973	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10890974	0.93[EUR][1000 genomes]
rs10890976	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10890977	0.92[EUR][1000 genomes]
rs10890978	0.96[CEU][hapmap];0.81[GIH][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes]
rs10890979	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10890980	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11212983	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11212984	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11212985	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11212988	0.86[EUR][1000 genomes]
rs11212989	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11212990	0.81[EUR][1000 genomes]
rs11212996	0.92[EUR][1000 genomes]
rs11213000	0.91[EUR][1000 genomes]
rs11213001	0.91[EUR][1000 genomes]
rs11213002	0.92[EUR][1000 genomes]
rs11213003	0.93[EUR][1000 genomes]
rs11213004	0.93[EUR][1000 genomes]
rs11213007	0.93[EUR][1000 genomes]
rs11213009	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11213013	0.89[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11213015	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11213016	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11213018	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11213025	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11213026	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11493855	0.83[EUR][1000 genomes]
rs11518210	0.93[EUR][1000 genomes]
rs11530739	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11530741	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12221986	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12222616	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12226597	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12365943	0.91[EUR][1000 genomes]
rs12422091	1.00[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12786593	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1384113	0.86[EUR][1000 genomes]
rs1384114	0.92[EUR][1000 genomes]
rs1396912	0.86[EUR][1000 genomes]
rs1396913	0.86[EUR][1000 genomes]
rs1482040	0.86[EUR][1000 genomes]
rs1482042	0.92[EUR][1000 genomes]
rs1509732	0.86[EUR][1000 genomes]
rs1817478	0.93[EUR][1000 genomes]
rs1842704	0.86[EUR][1000 genomes]
rs1905079	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1963981	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2170455	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2220006	0.92[EUR][1000 genomes]
rs2357422	0.96[EUR][1000 genomes]
rs2357425	0.93[EUR][1000 genomes]
rs2357580	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34126728	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4753865	0.92[EUR][1000 genomes]
rs4754385	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4754386	0.93[EUR][1000 genomes]
rs4754387	0.85[EUR][1000 genomes]
rs4754391	0.93[EUR][1000 genomes]
rs7109378	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7114760	0.92[EUR][1000 genomes]
rs7932349	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7932475	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7932840	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs922774	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs992975	0.92[EUR][1000 genomes]
rs993709	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1053898	chr11:109075527-109140982	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1041669	chr11:109085822-109282528	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1851153	chr11:109097430-109156782	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109113400-109117400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:109113600-109117400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:109113600-109117400	Weak transcription	HMEC	breast
4	chr11:109114600-109117400	Weak transcription	NHEK	skin
5	chr11:109117000-109118200	Enhancers	Osteobl	bone
6	chr11:109117200-109118000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:109117200-109118200	Enhancers	Muscle Satellite Cultured Cells	--

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