Variant report

Variant	rs10890980
Chromosome Location	chr11:109133404-109133405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1023937	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1031982	0.86[EUR][1000 genomes]
rs1031983	0.92[EUR][1000 genomes]
rs10502112	0.86[EUR][1000 genomes]
rs10789721	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10890960	0.93[EUR][1000 genomes]
rs10890963	0.86[EUR][1000 genomes]
rs10890965	0.93[EUR][1000 genomes]
rs10890966	0.86[EUR][1000 genomes]
rs10890967	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10890968	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10890970	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10890971	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10890972	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890973	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890974	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10890976	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10890977	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10890978	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10890979	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11212983	0.93[EUR][1000 genomes]
rs11212984	0.93[EUR][1000 genomes]
rs11212985	0.93[EUR][1000 genomes]
rs11212988	0.86[EUR][1000 genomes]
rs11212989	0.93[EUR][1000 genomes]
rs11212990	0.82[EUR][1000 genomes]
rs11212996	0.93[EUR][1000 genomes]
rs11213000	0.91[EUR][1000 genomes]
rs11213001	0.92[EUR][1000 genomes]
rs11213002	0.93[EUR][1000 genomes]
rs11213003	0.93[EUR][1000 genomes]
rs11213004	0.92[EUR][1000 genomes]
rs11213007	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11213009	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11213013	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11213015	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11213016	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11213018	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11213025	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11213026	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11493855	0.84[EUR][1000 genomes]
rs11518210	0.94[EUR][1000 genomes]
rs11530739	0.93[EUR][1000 genomes]
rs11530741	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221986	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12222616	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12226597	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365943	0.92[EUR][1000 genomes]
rs12422091	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12786593	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1384113	0.86[EUR][1000 genomes]
rs1384114	0.93[EUR][1000 genomes]
rs1396912	0.86[EUR][1000 genomes]
rs1396913	0.86[EUR][1000 genomes]
rs1482040	0.86[EUR][1000 genomes]
rs1482042	0.93[EUR][1000 genomes]
rs1509732	0.86[EUR][1000 genomes]
rs1817478	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1842704	0.86[EUR][1000 genomes]
rs1905079	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1963981	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2170455	0.90[EUR][1000 genomes]
rs2220006	0.93[EUR][1000 genomes]
rs2357422	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2357425	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2357580	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34126728	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4753865	0.93[EUR][1000 genomes]
rs4754385	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4754386	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4754387	0.86[EUR][1000 genomes]
rs4754391	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7109378	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114760	0.93[EUR][1000 genomes]
rs7932349	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7932475	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7932840	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs922774	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs992975	0.93[EUR][1000 genomes]
rs993709	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1053898	chr11:109075527-109140982	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1041669	chr11:109085822-109282528	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1851153	chr11:109097430-109156782	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109133400-109134200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:109133400-109134600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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