Variant report

Variant	rs11212985
Chromosome Location	chr11:109073592-109073593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1023937	0.86[EUR][1000 genomes]
rs1031982	0.93[EUR][1000 genomes]
rs1031983	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10502112	0.93[EUR][1000 genomes]
rs10789715	0.81[EUR][1000 genomes]
rs10789716	0.82[EUR][1000 genomes]
rs10789721	0.92[EUR][1000 genomes]
rs10890953	0.83[EUR][1000 genomes]
rs10890955	0.82[EUR][1000 genomes]
rs10890960	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890963	0.93[EUR][1000 genomes]
rs10890965	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10890966	0.93[EUR][1000 genomes]
rs10890967	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10890968	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10890970	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10890971	0.85[EUR][1000 genomes]
rs10890972	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10890973	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10890974	0.87[EUR][1000 genomes]
rs10890976	0.83[EUR][1000 genomes]
rs10890977	0.86[EUR][1000 genomes]
rs10890978	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs10890979	0.93[EUR][1000 genomes]
rs10890980	0.93[EUR][1000 genomes]
rs11212958	0.82[EUR][1000 genomes]
rs11212983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11212984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11212988	0.93[EUR][1000 genomes]
rs11212989	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11212990	0.88[EUR][1000 genomes]
rs11212996	0.87[EUR][1000 genomes]
rs11213000	0.87[EUR][1000 genomes]
rs11213001	0.86[EUR][1000 genomes]
rs11213002	0.87[EUR][1000 genomes]
rs11213003	0.86[EUR][1000 genomes]
rs11213004	0.85[EUR][1000 genomes]
rs11213007	0.86[EUR][1000 genomes]
rs11213009	0.83[EUR][1000 genomes]
rs11213013	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11213015	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs11213016	1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes]
rs11213018	0.93[EUR][1000 genomes]
rs11213025	0.93[EUR][1000 genomes]
rs11213026	0.91[EUR][1000 genomes]
rs11493855	0.90[EUR][1000 genomes]
rs11518210	0.87[EUR][1000 genomes]
rs11530739	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11530741	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12221986	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12222616	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12226597	0.93[EUR][1000 genomes]
rs12365943	0.86[EUR][1000 genomes]
rs12422091	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes]
rs12786593	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1384113	0.93[EUR][1000 genomes]
rs1384114	0.87[EUR][1000 genomes]
rs1396912	0.93[EUR][1000 genomes]
rs1396913	0.93[EUR][1000 genomes]
rs1482040	0.93[EUR][1000 genomes]
rs1482042	0.87[EUR][1000 genomes]
rs1509732	0.93[EUR][1000 genomes]
rs1817478	0.87[EUR][1000 genomes]
rs1905079	0.93[EUR][1000 genomes]
rs1963981	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2170455	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2220006	0.87[EUR][1000 genomes]
rs2357422	0.89[EUR][1000 genomes]
rs2357425	0.87[EUR][1000 genomes]
rs2357580	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34126728	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4753865	0.87[EUR][1000 genomes]
rs4754385	0.93[EUR][1000 genomes]
rs4754386	0.87[EUR][1000 genomes]
rs4754387	0.93[EUR][1000 genomes]
rs4754391	0.87[EUR][1000 genomes]
rs7109378	0.92[EUR][1000 genomes]
rs7114760	0.87[EUR][1000 genomes]
rs7932349	0.92[EUR][1000 genomes]
rs7932475	0.93[EUR][1000 genomes]
rs7932840	0.93[EUR][1000 genomes]
rs922774	0.93[EUR][1000 genomes]
rs992975	0.87[EUR][1000 genomes]
rs993709	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109068800-109108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:109073200-109075000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:109073400-109073600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:109073400-109073800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:109073400-109073800	Enhancers	Brain Hippocampus Middle	brain

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