Variant report
| Variant | rs10792232 |
|---|---|
| Chromosome Location | chr11:59085841-59085842 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-OR5A2-2 | chr11:59084702-59086817 | l_478_chr11:59084350-59086817_testes |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs12417674 | 0.89[EUR][1000 genomes] |
| rs12418613 | 0.88[EUR][1000 genomes] |
| rs12419033 | 0.89[EUR][1000 genomes] |
| rs12419445 | 0.89[EUR][1000 genomes] |
| rs12420443 | 0.88[EUR][1000 genomes] |
| rs12420477 | 0.88[EUR][1000 genomes] |
| rs12801196 | 0.88[EUR][1000 genomes] |
| rs12806497 | 0.88[EUR][1000 genomes] |
| rs12808401 | 0.88[EUR][1000 genomes] |
| rs12808731 | 0.88[EUR][1000 genomes] |
| rs1522759 | 0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1589601 | 0.88[EUR][1000 genomes] |
| rs1608210 | 0.89[EUR][1000 genomes] |
| rs1608211 | 0.89[EUR][1000 genomes] |
| rs17498652 | 0.88[EUR][1000 genomes] |
| rs1955070 | 0.88[EUR][1000 genomes] |
| rs2198451 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs34037092 | 0.88[EUR][1000 genomes] |
| rs34387009 | 0.89[EUR][1000 genomes] |
| rs34730029 | 0.89[EUR][1000 genomes] |
| rs35872497 | 0.88[EUR][1000 genomes] |
| rs4939272 | 0.80[EUR][1000 genomes] |
| rs61902489 | 0.88[EUR][1000 genomes] |
| rs61902558 | 0.86[EUR][1000 genomes] |
| rs61904569 | 0.95[EUR][1000 genomes] |
| rs61904597 | 0.89[EUR][1000 genomes] |
| rs7103331 | 0.87[AFR][1000 genomes];0.80[EUR][1000 genomes] |
| rs7105556 | 0.85[AFR][1000 genomes] |
| rs7928120 | 0.83[ASN][1000 genomes] |
| rs7929008 | 0.90[EUR][1000 genomes] |
| rs7934882 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050013 | chr11:58394598-59221090 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv948365 | chr11:58515163-59156405 | Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 59 gene(s) | inside rSNPs | diseases |
| 3 | nsv1046084 | chr11:59034871-59314519 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
