Variant report

Variant	rs1608210
Chromosome Location	chr11:59135172-59135173
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1026320	0.85[EUR][1000 genomes]
rs10792232	0.89[EUR][1000 genomes]
rs11601772	1.00[CEU][hapmap]
rs11602856	0.85[EUR][1000 genomes]
rs11604216	0.84[EUR][1000 genomes]
rs11605288	0.85[EUR][1000 genomes]
rs11605572	0.81[CEU][hapmap]
rs11606927	0.85[EUR][1000 genomes]
rs11606980	0.81[EUR][1000 genomes]
rs12417674	0.97[EUR][1000 genomes]
rs12418613	0.99[EUR][1000 genomes]
rs12419033	0.97[EUR][1000 genomes]
rs12419445	0.97[EUR][1000 genomes]
rs12420159	0.82[EUR][1000 genomes]
rs12420443	0.99[EUR][1000 genomes]
rs12420477	0.99[EUR][1000 genomes]
rs12785234	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs12801196	0.99[EUR][1000 genomes]
rs12806497	0.99[EUR][1000 genomes]
rs12808401	0.99[EUR][1000 genomes]
rs12808731	0.99[EUR][1000 genomes]
rs1349777	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs1453544	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs1453547	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs1453549	0.85[EUR][1000 genomes]
rs1453550	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs1453551	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs1453552	0.84[EUR][1000 genomes]
rs1522759	0.95[CEU][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1589600	0.97[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1589601	0.99[EUR][1000 genomes]
rs1608211	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1608212	0.82[EUR][1000 genomes]
rs17498652	0.99[EUR][1000 genomes]
rs17500478	0.83[EUR][1000 genomes]
rs17591107	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs1851513	0.82[EUR][1000 genomes]
rs1879929	0.85[EUR][1000 genomes]
rs1955070	0.99[EUR][1000 genomes]
rs1972149	0.82[EUR][1000 genomes]
rs2040326	0.93[YRI][hapmap]
rs2123675	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2123676	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2167923	0.83[EUR][1000 genomes]
rs2198451	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34037092	0.99[EUR][1000 genomes]
rs34387009	0.98[EUR][1000 genomes]
rs34730029	0.97[EUR][1000 genomes]
rs35630700	0.84[EUR][1000 genomes]
rs35872497	0.99[EUR][1000 genomes]
rs4938916	0.95[CEU][hapmap];0.91[JPT][hapmap]
rs61901576	0.84[EUR][1000 genomes]
rs61901620	0.83[EUR][1000 genomes]
rs61902489	0.99[EUR][1000 genomes]
rs61902558	0.97[EUR][1000 genomes]
rs61902559	0.84[EUR][1000 genomes]
rs61904569	0.93[EUR][1000 genomes]
rs61904597	0.97[EUR][1000 genomes]
rs7121582	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7929008	0.93[EUR][1000 genomes]
rs7934882	0.99[EUR][1000 genomes]
rs7935959	0.85[EUR][1000 genomes]
rs9787928	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv541052	chr11:59119390-59185103	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1039690	chr11:59124719-59178832	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1047952	chr11:59124719-59221606	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59135000-59137200	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links