Variant report

Variant	rs7935959
Chromosome Location	chr11:59194787-59194788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:59194410-59194823	MCF10A-Er-Src	breast:	n/a	chr11:59194444-59194453
2	FOS	chr11:59194497-59194808	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr11:59194474-59194820	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr11:59194466-59194801	MCF10A-Er-Src	breast:	n/a	n/a
5	JUND	chr11:59193729-59194795	H1-hESC	embryonic stem cell:	n/a	chr11:59194444-59194453

Variant related genes	Relation type
OR5A2	TF binding region

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1026320	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229957	0.85[EUR][1000 genomes]
rs11229958	0.85[EUR][1000 genomes]
rs11602535	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11602856	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605288	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606927	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606980	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12417674	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12418613	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12419033	0.84[EUR][1000 genomes]
rs12419445	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12420159	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12420443	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12420477	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12785234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12787182	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12801196	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12806497	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12808401	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12808731	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1349777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1453542	0.85[EUR][1000 genomes]
rs1453544	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1453547	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1453549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453550	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1589601	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1608210	0.85[EUR][1000 genomes]
rs1608211	0.85[EUR][1000 genomes]
rs17498652	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17500478	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17584022	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17591107	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1901856	0.85[EUR][1000 genomes]
rs1955070	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2167923	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2198451	0.87[EUR][1000 genomes]
rs34037092	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34387009	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34730029	0.84[EUR][1000 genomes]
rs35630700	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35872497	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4939291	0.85[EUR][1000 genomes]
rs61901576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901620	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61902489	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61902558	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61904569	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61904597	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7929008	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7934882	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7952071	0.84[EUR][1000 genomes]
rs9787928	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1047952	chr11:59124719-59221606	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59192400-59194800	Enhancers	H9 Cell Line	embryonic stem cell
2	chr11:59192800-59194800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr11:59193000-59194800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:59193200-59195600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:59193400-59195000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:59194000-59194800	Enhancers	Stomach Mucosa	stomach
7	chr11:59194000-59195200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr11:59194400-59195200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:59194400-59195200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:59194400-59195200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr11:59194400-59195400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:59194600-59194800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:59194600-59194800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:59194600-59194800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:59194600-59195000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr11:59194600-59195200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr11:59194600-59195200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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