Variant report

Variant	rs61901620
Chromosome Location	chr11:59226723-59226724
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1026320	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11229957	0.87[EUR][1000 genomes]
rs11229958	0.87[EUR][1000 genomes]
rs11602535	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11602856	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11605288	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11606927	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11606980	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417674	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12418613	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12419033	0.82[EUR][1000 genomes]
rs12419445	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12420159	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420443	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12420477	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12785234	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12787182	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12801196	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12806497	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12808401	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12808731	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1349777	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1453542	0.87[EUR][1000 genomes]
rs1453544	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453547	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1453549	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1453550	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1453551	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1453552	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1589601	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1608210	0.83[EUR][1000 genomes]
rs1608211	0.83[EUR][1000 genomes]
rs17498652	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17500478	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17584022	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17591107	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1901855	0.80[EUR][1000 genomes]
rs1901856	0.87[EUR][1000 genomes]
rs1955070	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2167923	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2198451	0.85[EUR][1000 genomes]
rs34037092	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34387009	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34730029	0.82[EUR][1000 genomes]
rs35630700	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35872497	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4939291	0.87[EUR][1000 genomes]
rs61901576	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61902489	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61902558	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61904569	0.84[AMR][1000 genomes]
rs61904597	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7929008	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7934882	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7935959	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7952071	0.86[EUR][1000 genomes]
rs9787928	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv975342	chr11:59203908-59237268	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59224200-59229800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:59224400-59230600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links