Variant report

Variant	rs61902558
Chromosome Location	chr11:59180883-59180884
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59179256..59181467-chr11:59196867..59199078,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1026320	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10792232	0.86[EUR][1000 genomes]
rs11602535	0.82[EUR][1000 genomes]
rs11602856	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11604216	0.87[EUR][1000 genomes]
rs11605288	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11606927	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11606980	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12417674	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12418613	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12419033	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12419445	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12420159	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12420443	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12420477	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12785234	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12787182	0.82[EUR][1000 genomes]
rs12801196	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12806497	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12808401	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12808731	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1349777	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1453544	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1453547	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1453549	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1453550	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1453551	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1453552	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1522759	0.88[EUR][1000 genomes]
rs1589601	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1608210	0.97[EUR][1000 genomes]
rs1608211	0.97[EUR][1000 genomes]
rs17498652	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17500478	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17584022	0.82[EUR][1000 genomes]
rs17591107	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1879929	0.86[EUR][1000 genomes]
rs1955070	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2123675	0.80[EUR][1000 genomes]
rs2123676	0.80[EUR][1000 genomes]
rs2167923	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2198451	0.99[EUR][1000 genomes]
rs34037092	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34387009	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34730029	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35630700	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35872497	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61901576	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61901620	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61902489	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61902559	0.87[EUR][1000 genomes]
rs61904569	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61904597	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7929008	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7934882	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7935959	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9787928	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv541052	chr11:59119390-59185103	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1047952	chr11:59124719-59221606	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59180000-59181400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:59180000-59182000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:59180200-59181200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr11:59180400-59181600	Enhancers	Primary hematopoietic stem cells	blood
5	chr11:59180400-59181800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr11:59180800-59181000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
7	chr11:59180800-59181200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:59180800-59181400	Enhancers	Primary B cells from peripheral blood	blood

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