Variant report

Variant	rs11604216
Chromosome Location	chr11:59169295-59169296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11229957	0.86[EUR][1000 genomes]
rs11229958	0.86[EUR][1000 genomes]
rs11604452	0.82[CEU][hapmap]
rs12417674	0.83[EUR][1000 genomes]
rs12418613	0.85[EUR][1000 genomes]
rs12419033	0.83[EUR][1000 genomes]
rs12419445	0.83[EUR][1000 genomes]
rs12420443	0.85[EUR][1000 genomes]
rs12420477	0.85[EUR][1000 genomes]
rs12801196	0.85[EUR][1000 genomes]
rs12806497	0.85[EUR][1000 genomes]
rs12808401	0.85[EUR][1000 genomes]
rs12808731	0.85[EUR][1000 genomes]
rs1453542	0.86[EUR][1000 genomes]
rs1589600	0.91[EUR][1000 genomes]
rs1589601	0.85[EUR][1000 genomes]
rs1608210	0.84[EUR][1000 genomes]
rs1608211	0.84[EUR][1000 genomes]
rs1608212	0.91[EUR][1000 genomes]
rs17498652	0.85[EUR][1000 genomes]
rs1851513	0.91[EUR][1000 genomes]
rs1879929	0.99[EUR][1000 genomes]
rs1901856	0.86[EUR][1000 genomes]
rs1955070	0.85[EUR][1000 genomes]
rs1972149	0.91[EUR][1000 genomes]
rs2040326	0.87[CEU][hapmap]
rs2091008	0.85[EUR][1000 genomes]
rs2123675	0.91[EUR][1000 genomes]
rs2123676	0.91[EUR][1000 genomes]
rs2198451	0.86[EUR][1000 genomes]
rs34037092	0.85[EUR][1000 genomes]
rs34387009	0.84[EUR][1000 genomes]
rs34730029	0.83[EUR][1000 genomes]
rs35872497	0.85[EUR][1000 genomes]
rs4536240	0.80[EUR][1000 genomes]
rs4939272	0.81[EUR][1000 genomes]
rs4939291	0.86[EUR][1000 genomes]
rs61902489	0.85[EUR][1000 genomes]
rs61902558	0.87[EUR][1000 genomes]
rs61902559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904597	0.83[EUR][1000 genomes]
rs7103331	0.81[EUR][1000 genomes]
rs7105556	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs7121582	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs7934882	0.85[EUR][1000 genomes]
rs7944892	0.84[EUR][1000 genomes]
rs7949055	0.87[EUR][1000 genomes]
rs7952071	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv541052	chr11:59119390-59185103	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1039690	chr11:59124719-59178832	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1047952	chr11:59124719-59221606	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59168600-59169600	Enhancers	Liver	Liver

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