Variant report
| Variant | rs4536240 |
|---|---|
| Chromosome Location | chr11:59085167-59085168 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-OR5A2-2 | chr11:59084702-59086817 | l_478_chr11:59084350-59086817_testes |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10750912 | 0.80[ASN][1000 genomes] |
| rs10792231 | 0.85[ASN][1000 genomes] |
| rs11229912 | 0.85[ASN][1000 genomes] |
| rs11229914 | 0.94[ASN][1000 genomes] |
| rs11501602 | 0.81[ASN][1000 genomes] |
| rs11604216 | 0.80[EUR][1000 genomes] |
| rs1522759 | 0.81[EUR][1000 genomes] |
| rs1589600 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1608212 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1851513 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1879929 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1945588 | 0.85[ASN][1000 genomes] |
| rs1945589 | 0.85[ASN][1000 genomes] |
| rs1972149 | 0.89[EUR][1000 genomes] |
| rs2091008 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2123675 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2123676 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4939272 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61902559 | 0.80[EUR][1000 genomes] |
| rs7103331 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7105556 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7111928 | 0.81[ASN][1000 genomes] |
| rs7121582 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7944892 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7945064 | 0.80[ASN][1000 genomes] |
| rs7949055 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7951053 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050013 | chr11:58394598-59221090 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv948365 | chr11:58515163-59156405 | Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 59 gene(s) | inside rSNPs | diseases |
| 3 | nsv1046084 | chr11:59034871-59314519 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
