Variant report

Variant	rs7111928
Chromosome Location	chr11:59051014-59051015
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10750912	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10792231	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11229912	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11229914	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11501602	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945588	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1945589	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4536240	0.81[ASN][1000 genomes]
rs4939272	0.81[ASN][1000 genomes]
rs7103331	0.81[ASN][1000 genomes]
rs7926943	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7945064	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7951053	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv1821250	chr11:58925860-59059179	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv3351601	chr11:58979308-59052763	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3381199	chr11:59015574-59068938	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59042600-59051800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:59049000-59051200	Weak transcription	Pancreas	Pancrea
3	chr11:59049400-59051400	Weak transcription	Stomach Mucosa	stomach
4	chr11:59050200-59053200	Enhancers	Liver	Liver
5	chr11:59050400-59051600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:59050400-59052600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr11:59050600-59051800	Enhancers	Primary T cells from cord blood	blood
8	chr11:59050600-59051800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:59050600-59052800	Flanking Active TSS	GM12878-XiMat	blood
10	chr11:59050800-59051800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr11:59050800-59051800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:59050800-59052200	Flanking Active TSS	Primary B cells from peripheral blood	blood
13	chr11:59050800-59052200	Enhancers	Primary hematopoietic stem cells	blood
14	chr11:59050800-59052200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr11:59050800-59052400	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr11:59050800-59052400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:59050800-59052400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr11:59050800-59052400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:59051000-59051400	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr11:59051000-59051600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr11:59051000-59051800	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr11:59051000-59051800	Enhancers	Primary T cells fromperipheralblood	blood
23	chr11:59051000-59052000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:59051000-59052000	Enhancers	Duodenum Mucosa	Duodenum
25	chr11:59051000-59052200	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr11:59051000-59052400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr11:59051000-59052400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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