Variant report

Variant	rs11229914
Chromosome Location	chr11:59068796-59068797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10750912	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10792231	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11229912	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11501602	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1945588	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1945589	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2091008	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4536240	0.94[ASN][1000 genomes]
rs4939272	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7103331	0.94[ASN][1000 genomes]
rs7105556	0.88[ASN][1000 genomes]
rs7111928	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7926943	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7944892	0.84[ASN][1000 genomes]
rs7945064	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7949055	0.85[ASN][1000 genomes]
rs7951053	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv3381199	chr11:59015574-59068938	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv972924	chr11:59059165-59071373	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats	TF binding region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59064200-59069800	Weak transcription	Pancreas	Pancrea
2	chr11:59068400-59069000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:59068600-59069200	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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