Variant report

Variant	rs4938916
Chromosome Location	chr11:59101682-59101683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1026320	0.81[EUR][1000 genomes]
rs10792232	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11601772	0.95[CEU][hapmap]
rs11602856	0.80[EUR][1000 genomes]
rs11605288	0.80[EUR][1000 genomes]
rs11606927	0.80[EUR][1000 genomes]
rs12417674	0.92[EUR][1000 genomes]
rs12418613	0.91[EUR][1000 genomes]
rs12419033	0.92[EUR][1000 genomes]
rs12419445	0.92[EUR][1000 genomes]
rs12420443	0.91[EUR][1000 genomes]
rs12420477	0.91[EUR][1000 genomes]
rs12801196	0.91[EUR][1000 genomes]
rs12806497	0.91[EUR][1000 genomes]
rs12808401	0.91[EUR][1000 genomes]
rs12808731	0.91[EUR][1000 genomes]
rs1349777	0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs1453544	0.84[TSI][hapmap]
rs1453547	0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs1453549	0.80[EUR][1000 genomes]
rs1453550	0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs1453551	0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs1522759	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1589601	0.91[EUR][1000 genomes]
rs1608210	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1608211	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17498652	0.91[EUR][1000 genomes]
rs17584022	0.84[TSI][hapmap]
rs17591107	0.84[TSI][hapmap]
rs1955070	0.91[EUR][1000 genomes]
rs2040326	0.88[TSI][hapmap]
rs2091008	0.81[EUR][1000 genomes]
rs2198451	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34037092	0.91[EUR][1000 genomes]
rs34387009	0.93[EUR][1000 genomes]
rs34730029	0.92[EUR][1000 genomes]
rs35872497	0.91[EUR][1000 genomes]
rs4536240	0.80[EUR][1000 genomes]
rs4939272	0.81[EUR][1000 genomes]
rs61902489	0.91[EUR][1000 genomes]
rs61902558	0.89[EUR][1000 genomes]
rs61904569	0.95[EUR][1000 genomes]
rs61904597	0.92[EUR][1000 genomes]
rs7103331	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7105556	0.88[ASW][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7121582	0.84[TSI][hapmap]
rs7928120	0.86[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs7929008	0.93[EUR][1000 genomes]
rs7934882	0.91[EUR][1000 genomes]
rs7935959	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4938916	OR5AR1	cis	cerebellum	SCAN
rs4938916	OR5D13	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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