Variant report

Variant	rs10792788
Chromosome Location	chr11:84631878-84631879
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10792787	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10898330	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10898331	0.98[ASN][1000 genomes]
rs10898332	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234243	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12225342	0.86[ASN][1000 genomes]
rs34083949	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs55872437	0.82[ASN][1000 genomes]
rs7111775	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7127374	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84621200-84633000	Weak transcription	Right Atrium	heart
2	chr11:84625800-84633400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:84627800-84633400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:84629800-84632400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:84630600-84633200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:84630600-84633200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:84631200-84632800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:84631200-84633000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:84631200-84633000	Enhancers	Fetal Heart	heart
10	chr11:84631200-84633400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:84631200-84634400	Active TSS	Fetal Brain Female	brain
12	chr11:84631400-84632600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr11:84631400-84634600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:84631600-84633000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links