Variant report

Variant	rs55872437
Chromosome Location	chr11:84618486-84618487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10792787	0.95[ASN][1000 genomes]
rs10792788	0.82[ASN][1000 genomes]
rs10898323	0.80[ASN][1000 genomes]
rs10898324	0.80[ASN][1000 genomes]
rs10898325	0.80[ASN][1000 genomes]
rs10898330	0.82[ASN][1000 genomes]
rs10898331	0.82[ASN][1000 genomes]
rs10898332	0.82[ASN][1000 genomes]
rs11234235	0.80[ASN][1000 genomes]
rs11234236	0.80[ASN][1000 genomes]
rs11234243	0.82[ASN][1000 genomes]
rs12225342	0.92[ASN][1000 genomes]
rs34083949	0.82[ASN][1000 genomes]
rs4943903	0.80[ASN][1000 genomes]
rs4943904	0.80[ASN][1000 genomes]
rs4944501	0.80[ASN][1000 genomes]
rs4944502	0.80[ASN][1000 genomes]
rs61907731	0.80[ASN][1000 genomes]
rs6592213	0.80[ASN][1000 genomes]
rs7111775	0.93[ASN][1000 genomes]
rs7127374	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv817205	chr11:84497319-84628963	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv555625	chr11:84547441-84629013	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84616400-84618600	Enhancers	NHLF	lung
2	chr11:84616400-84618800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:84617400-84618600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:84617400-84618600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:84617600-84618600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr11:84618200-84618600	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links