Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10792787	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10792788	0.86[ASN][1000 genomes]
rs10898319	0.83[EUR][1000 genomes]
rs10898320	0.83[EUR][1000 genomes]
rs10898321	0.83[EUR][1000 genomes]
rs10898322	0.83[EUR][1000 genomes]
rs10898325	0.84[EUR][1000 genomes]
rs10898326	0.84[EUR][1000 genomes]
rs10898330	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10898331	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10898332	0.86[ASN][1000 genomes]
rs11234235	0.83[EUR][1000 genomes]
rs11234236	0.83[EUR][1000 genomes]
rs11234239	0.84[EUR][1000 genomes]
rs11234243	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34083949	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4943902	0.88[EUR][1000 genomes]
rs4943903	0.87[EUR][1000 genomes]
rs4943904	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4944500	0.83[EUR][1000 genomes]
rs4944501	0.88[EUR][1000 genomes]
rs4944502	0.88[EUR][1000 genomes]
rs55872437	0.92[ASN][1000 genomes]
rs61907731	0.83[EUR][1000 genomes]
rs6592213	0.89[EUR][1000 genomes]
rs7111775	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7127374	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7931437	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84621200-84633000	Weak transcription	Right Atrium	heart
2	chr11:84625800-84633400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:84627800-84633400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:84630600-84633200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:84630600-84633200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:84631200-84632800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:84631200-84633000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:84631200-84633000	Enhancers	Fetal Heart	heart
9	chr11:84631200-84633400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:84631200-84634400	Active TSS	Fetal Brain Female	brain
11	chr11:84631400-84632600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:84631400-84634600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:84631600-84633000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:84632000-84633200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr11:84632200-84633400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:84632200-84634200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:84632400-84632600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr11:84632400-84633400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:84632400-84633400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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