Variant report

Variant	rs10792797
Chromosome Location	chr11:71296482-71296483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71290639..71292875-chr11:71296370..71298788,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249387	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10792799	0.85[EUR][1000 genomes]
rs10792800	0.81[ASN][1000 genomes]
rs10792801	0.96[EUR][1000 genomes]
rs10792802	0.96[EUR][1000 genomes]
rs10898348	0.87[EUR][1000 genomes]
rs10898353	0.92[EUR][1000 genomes]
rs10898354	0.93[EUR][1000 genomes]
rs11234287	0.96[EUR][1000 genomes]
rs11234290	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes]
rs2096799	0.84[EUR][1000 genomes]
rs4424699	0.95[EUR][1000 genomes]
rs4945043	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7111816	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs7115376	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs7925992	0.89[EUR][1000 genomes]
rs7926139	0.81[EUR][1000 genomes]
rs7934017	0.96[EUR][1000 genomes]
rs7938210	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs7939179	0.83[CEU][hapmap];0.88[JPT][hapmap]
rs7949473	0.95[CEU][hapmap];0.81[JPT][hapmap]
rs9704735	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs9795200	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv3372246	chr11:71223101-71435819	Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1043207	chr11:71293875-71442666	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1037088	chr11:71293875-71538991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv975947	chr11:71295301-71304403	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv975946	chr11:71295301-71315526	Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71291800-71297000	Weak transcription	Fetal Intestine Large	intestine
2	chr11:71291800-71299000	Weak transcription	Gastric	stomach
3	chr11:71293600-71300000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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