Variant report
Variant | rs7925992 |
---|---|
Chromosome Location | chr11:71301093-71301094 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:61)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr11:71301062-71301112 | AG09319 | gingival: | n/a |
2 | chr11:71301062-71301112 | HPAEpiC | pulmonary alveolar: | n/a |
3 | chr11:71301062-71301112 | ovcar-3 | ovarian: | n/a |
4 | chr11:71301062-71301112 | Hepatocyte | liver: | n/a |
5 | chr11:71301062-71301112 | HEEpiC | esophagus: | n/a |
6 | chr11:71301062-71301112 | HepG2 | liver: | n/a |
7 | chr11:71301062-71301112 | NT2-D1 | testis: | n/a |
8 | chr11:71301062-71301112 | SKMC | muscle: | n/a |
9 | chr11:71301062-71301112 | AG09309 | skin: | n/a |
10 | chr11:71301062-71301112 | HMEC | breast: | n/a |
11 | chr11:71301062-71301112 | K562 | blood: | n/a |
12 | chr11:71301062-71301112 | BE2_C | brain: | n/a |
13 | chr11:71301062-71301112 | HL-60 | blood: | n/a |
14 | chr11:71301062-71301112 | SK-N-SH | brain: | n/a |
15 | chr11:71301062-71301112 | HRCEpiC | kidney: | n/a |
16 | chr11:71301062-71301112 | HIPEpiC | eye: | n/a |
17 | chr11:71301062-71301112 | NHBE | bronchial: | n/a |
18 | chr11:71301062-71301112 | NH-A | brain: | n/a |
19 | chr11:71301062-71301112 | SK-N-SH_RA | brain: | n/a |
20 | chr11:71301062-71301112 | AG04449 | skin: | fetal |
21 | chr11:71301062-71301112 | LNCaP | prostate: | n/a |
22 | chr11:71301062-71301112 | HRPEpiC | eye: | n/a |
23 | chr11:71301062-71301112 | U87 | brain: | n/a |
24 | chr11:71301062-71301112 | HUVEC | blood vessel: | n/a |
25 | chr11:71301062-71301112 | MCF10A-Er-Src | breast: | n/a |
26 | chr11:71301062-71301112 | T-47D | breast: | n/a |
27 | chr11:71301062-71301112 | HNPCEpiC | eye: | n/a |
28 | chr11:71301062-71301112 | AG10803 | skin: | n/a |
29 | chr11:71301062-71301112 | ProgFib | skin: | n/a |
30 | chr11:71301062-71301112 | AoSMC | blood vessel: | n/a |
31 | chr11:71301062-71301112 | A549 | lung: | n/a |
32 | chr11:71301062-71301112 | PANC-1 | pancreas: | n/a |
33 | chr11:71301062-71301112 | RPTEC | kidney: | n/a |
34 | chr11:71301062-71301112 | HCF | heart: | n/a |
35 | chr11:71301062-71301112 | HCPEpiC | choroid plexus: | n/a |
36 | chr11:71301062-71301112 | GM19239 | blood: | n/a |
37 | chr11:71301062-71301112 | GM12891 | blood: | n/a |
38 | chr11:71301062-71301112 | PFSK-1 | brain: | n/a |
39 | chr11:71301062-71301112 | H1-hESC | embryonic stem cell: | embryo |
40 | chr11:71301062-71301112 | IMR90 | lung: | fetal |
41 | chr11:71301062-71301112 | HEK293 | kidney: | embryo |
42 | chr11:71301062-71301112 | GM12892 | blood: | n/a |
43 | chr11:71301062-71301112 | GM12878 | blood: | n/a |
44 | chr11:71301062-71301112 | CMK | blood: | n/a |
45 | chr11:71301062-71301112 | HRE | kidney: | n/a |
46 | chr11:71301062-71301112 | SAEC | small airway: | n/a |
47 | chr11:71301062-71301112 | BJ | skin: | n/a |
48 | chr11:71301062-71301112 | HCT-116 | colon: | n/a |
49 | chr11:71301062-71301112 | MCF-7 | breast: | n/a |
50 | chr11:71301062-71301112 | Jurkat | blood: | n/a |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
OR7E87P | CpG island |
rs_ID | r2[population] |
---|---|
rs10792797 | 0.89[EUR][1000 genomes] |
rs10792799 | 0.80[EUR][1000 genomes] |
rs10792801 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10792802 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10792803 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10792804 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10898348 | 0.83[EUR][1000 genomes] |
rs10898353 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10898354 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11234287 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11234290 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2096799 | 0.81[EUR][1000 genomes] |
rs4424699 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7926139 | 0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs7934017 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs9795200 | 0.96[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530623 | chr11:71088949-72020418 | Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 134 gene(s) | inside rSNPs | diseases |
2 | esv3372246 | chr11:71223101-71435819 | Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
3 | nsv1043207 | chr11:71293875-71442666 | Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
4 | nsv1037088 | chr11:71293875-71538991 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
5 | nsv975947 | chr11:71295301-71304403 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
6 | nsv975946 | chr11:71295301-71315526 | Enhancers Bivalent Enhancer Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
7 | esv3527986 | chr11:71298409-71620955 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 32 gene(s) | inside rSNPs | diseases |
8 | esv3527987 | chr11:71298409-71620955 | Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 32 gene(s) | inside rSNPs | diseases |
9 | nsv1036258 | chr11:71299175-71523551 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
10 | nsv1041027 | chr11:71299175-71527896 | Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
11 | nsv1051879 | chr11:71299175-71536860 | Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
12 | nsv1044041 | chr11:71299175-71538991 | Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
13 | esv2761682 | chr11:71299175-71619923 | Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
No data |