Variant report

Variant	rs10792839
Chromosome Location	chr11:85938133-85938134
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10898451	0.91[ASN][1000 genomes]
rs11234584	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs1466802	0.95[CEU][hapmap]
rs1466803	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1472422	0.94[ASN][1000 genomes]
rs2374721	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.80[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3844145	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs3851186	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3851189	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6592278	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7128259	1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];0.92[ASN][1000 genomes]
rs7925413	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7929518	0.89[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7947529	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950735	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.80[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7952481	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10792839	EED	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85930000-85939800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:85934800-85939800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:85937600-85938400	Enhancers	Ovary	ovary
4	chr11:85937600-85941200	Weak transcription	Brain Anterior Caudate	brain
5	chr11:85938000-85939200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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