Variant report

Variant	rs3844145
Chromosome Location	chr11:85928516-85928517
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85919307..85921347-chr11:85927954..85931480,3	K562	blood:
2	chr11:85923282..85925341-chr11:85927794..85930196,2	K562	blood:
3	chr11:85923282..85925473-chr11:85927794..85931182,3	K562	blood:
4	chr11:85778712..85781091-chr11:85928233..85931498,3	MCF-7	breast:
5	chr11:85925600..85928219-chr11:85928375..85931276,2	K562	blood:
6	chr11:85752985..85755269-chr11:85927440..85930207,2	MCF-7	breast:
7	chr11:85840916..85843834-chr11:85928490..85931115,2	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10792838	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10792839	0.80[EUR][1000 genomes]
rs11234575	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11234584	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1466802	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2374721	0.90[CEU][hapmap]
rs3851189	0.82[EUR][1000 genomes]
rs7122535	0.96[ASN][1000 genomes]
rs7123014	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7929518	0.90[CEU][hapmap]
rs7950735	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85917200-85928800	Weak transcription	Hela-S3	cervix
2	chr11:85919600-85929200	Weak transcription	Right Atrium	heart
3	chr11:85921000-85929000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:85921600-85929800	Weak transcription	Fetal Intestine Large	intestine
5	chr11:85921800-85929200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:85923600-85929200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:85923600-85929800	Weak transcription	NHEK	skin
8	chr11:85924200-85929200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:85924400-85929000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:85925200-85929200	Weak transcription	Spleen	Spleen
11	chr11:85926000-85929000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:85926200-85929000	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:85926200-85929000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr11:85926200-85929000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:85926200-85929400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:85926200-85929800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:85926400-85928800	Weak transcription	K562	blood
18	chr11:85926400-85929000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr11:85926400-85929200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:85926400-85929200	Weak transcription	Placenta	Placenta
21	chr11:85926400-85929200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:85927000-85928800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:85927200-85929200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:85927400-85928600	Weak transcription	GM12878-XiMat	blood

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