Variant report

Variant	rs3851189
Chromosome Location	chr11:85932521-85932522
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10792839	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11234584	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs1466802	0.95[CEU][hapmap]
rs1466803	0.86[EUR][1000 genomes]
rs1472422	0.83[ASN][1000 genomes]
rs2374721	0.90[CEU][hapmap];0.82[CHB][hapmap];0.86[EUR][1000 genomes]
rs3844145	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs3851186	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592278	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7128259	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs7925413	0.86[EUR][1000 genomes]
rs7929518	0.95[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs7947529	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7950735	0.90[CEU][hapmap];0.82[CHB][hapmap];0.86[EUR][1000 genomes]
rs7952481	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85929600-85933000	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:85930000-85932800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:85930000-85932800	Weak transcription	HSMMtube	muscle
4	chr11:85930000-85933200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:85930000-85937600	Weak transcription	Ovary	ovary
6	chr11:85930000-85939800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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