Variant report

Variant	rs10792944
Chromosome Location	chr11:87064110-87064111
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:87063558..87064414-chr11:87132047..87133075,5	MCF-7	breast:
2	chr11:86580722..86581663-chr11:87063426..87064386,3	K562	blood:
3	chr11:87063674..87064391-chr11:87132176..87133005,2	MCF-7	breast:
4	chr11:87061961..87064505-chr11:87121712..87123455,2	K562	blood:
5	chr11:87063549..87064555-chr11:87132162..87133124,7	K562	blood:
6	chr11:87063466..87064138-chr11:87130978..87131506,2	K562	blood:
7	chr11:87063292..87065568-chr11:87066607..87068698,2	K562	blood:
8	chr11:87063460..87064443-chr11:88277394..88278604,4	K562	blood:

No data

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10501636	0.91[ASN][1000 genomes]
rs10792942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10792943	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898667	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10898669	0.85[CEU][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10898673	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898674	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898675	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898677	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898682	0.97[ASN][1000 genomes]
rs10898686	0.91[ASN][1000 genomes]
rs10898690	0.86[ASN][1000 genomes]
rs11235087	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11235088	0.93[CEU][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11235104	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11235105	0.92[ASN][1000 genomes]
rs11235106	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11235107	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11235109	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11235110	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235122	1.00[ASN][1000 genomes]
rs11235130	0.97[ASN][1000 genomes]
rs11235137	0.86[ASN][1000 genomes]
rs11501862	0.97[ASN][1000 genomes]
rs11501863	0.97[ASN][1000 genomes]
rs11604458	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12276145	0.93[CEU][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12281655	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12294015	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12295057	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12295490	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12361047	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12363349	0.96[CEU][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12363623	0.97[ASN][1000 genomes]
rs12363892	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12790362	0.93[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2186727	0.81[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28395418	0.94[ASN][1000 genomes]
rs4245431	0.91[ASN][1000 genomes]
rs4453264	0.97[ASN][1000 genomes]
rs4471448	0.97[ASN][1000 genomes]
rs4536247	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4943983	0.91[ASN][1000 genomes]
rs4944698	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4944700	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4944701	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7122267	0.97[ASN][1000 genomes]
rs7125169	0.97[ASN][1000 genomes]
rs7125381	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7938135	0.97[ASN][1000 genomes]
rs7951257	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87048400-87095400	Weak transcription	Aorta	Aorta
2	chr11:87059200-87065200	Weak transcription	Right Atrium	heart
3	chr11:87061800-87066400	Enhancers	Primary hematopoietic stem cells	blood
4	chr11:87062000-87066200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:87062600-87065600	Enhancers	HUVEC	blood vessel
6	chr11:87062800-87064400	Enhancers	Primary B cells from peripheral blood	blood
7	chr11:87062800-87064600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:87062800-87064800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr11:87063200-87068400	Enhancers	Fetal Lung	lung
10	chr11:87063400-87064600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:87063400-87065000	Enhancers	Colon Smooth Muscle	Colon
12	chr11:87063400-87065600	Enhancers	Fetal Stomach	stomach
13	chr11:87063600-87064200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:87063600-87064200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:87063600-87064200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:87063600-87064200	Enhancers	Fetal Thymus	thymus
17	chr11:87063600-87064400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
18	chr11:87063600-87064400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr11:87063600-87064400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr11:87063600-87064400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:87063600-87064400	Enhancers	Brain Cingulate Gyrus	brain
22	chr11:87063600-87064400	Enhancers	Brain Hippocampus Middle	brain
23	chr11:87063600-87064400	Enhancers	Brain Substantia Nigra	brain
24	chr11:87063600-87064400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr11:87063600-87064400	Enhancers	Right Ventricle	heart
26	chr11:87063600-87064600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr11:87063600-87065200	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr11:87063600-87065200	Enhancers	Fetal Heart	heart
29	chr11:87063600-87065200	Enhancers	K562	blood
30	chr11:87063600-87067200	Enhancers	Adipose Nuclei	Adipose
31	chr11:87063800-87064200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:87063800-87064200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:87063800-87064200	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr11:87063800-87064200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:87063800-87064200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:87063800-87064200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:87063800-87064200	Flanking Active TSS	Brain Angular Gyrus	brain
38	chr11:87063800-87064200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
39	chr11:87063800-87064200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
40	chr11:87063800-87064200	Enhancers	Fetal Brain Male	brain
41	chr11:87063800-87064200	Bivalent Enhancer	Placenta	Placenta
42	chr11:87063800-87064200	Enhancers	Rectal Smooth Muscle	rectum
43	chr11:87063800-87064200	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr11:87063800-87064200	Active TSS	A549	lung
45	chr11:87063800-87064400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:87063800-87064400	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr11:87063800-87064400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:87063800-87064400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:87063800-87064400	Enhancers	Liver	Liver
50	chr11:87063800-87064400	Flanking Active TSS	Brain Anterior Caudate	brain

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