Variant report

Variant	rs11235122
Chromosome Location	chr11:87082024-87082025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10501636	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10792942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10792943	1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.92[ASN][1000 genomes]
rs10792944	1.00[ASN][1000 genomes]
rs10898669	0.90[YRI][hapmap]
rs10898673	0.92[ASN][1000 genomes]
rs10898674	0.92[ASN][1000 genomes]
rs10898675	0.92[ASN][1000 genomes]
rs10898677	1.00[ASN][1000 genomes]
rs10898682	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10898686	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10898690	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11235088	0.91[YRI][hapmap]
rs11235104	0.92[ASN][1000 genomes]
rs11235105	0.92[ASN][1000 genomes]
rs11235106	0.92[ASN][1000 genomes]
rs11235107	0.92[ASN][1000 genomes]
rs11235109	0.97[ASN][1000 genomes]
rs11235110	1.00[ASN][1000 genomes]
rs11235119	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11235130	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11235137	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11501862	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11501863	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11604458	0.97[ASN][1000 genomes]
rs12276145	0.91[YRI][hapmap]
rs12281655	0.92[ASN][1000 genomes]
rs12292705	0.85[MKK][hapmap]
rs12294015	0.97[ASN][1000 genomes]
rs12295057	0.92[ASN][1000 genomes]
rs12295490	0.97[ASN][1000 genomes]
rs12361047	0.92[ASN][1000 genomes]
rs12363349	0.97[GIH][hapmap];0.85[MKK][hapmap];0.91[YRI][hapmap]
rs12363623	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12363892	0.83[ASN][1000 genomes]
rs12790362	0.89[YRI][hapmap]
rs2186727	0.88[YRI][hapmap]
rs28395418	0.94[ASN][1000 genomes]
rs4245431	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4453264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4471448	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4536247	0.92[ASN][1000 genomes]
rs4943983	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4944700	0.92[ASN][1000 genomes]
rs4944701	0.97[ASN][1000 genomes]
rs4944704	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4944705	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7122267	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7125169	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7125381	0.92[ASN][1000 genomes]
rs7938135	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7951257	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11235122	PRSS23	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87048400-87095400	Weak transcription	Aorta	Aorta
2	chr11:87071200-87088200	Weak transcription	Liver	Liver
3	chr11:87077600-87088600	Weak transcription	Left Ventricle	heart
4	chr11:87079200-87082400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:87079200-87082800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:87079600-87082200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:87080000-87085200	Weak transcription	Adipose Nuclei	Adipose
8	chr11:87080400-87084000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:87080600-87084000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:87081200-87082200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:87081200-87082200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:87081200-87082400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:87081200-87084200	Weak transcription	Fetal Kidney	kidney
14	chr11:87081200-87086200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:87081400-87082400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:87081800-87082400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:87081800-87082600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:87081800-87082600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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