Variant report

Variant	rs28395418
Chromosome Location	chr11:87056847-87056848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10501636	0.86[ASN][1000 genomes]
rs10792942	0.92[ASN][1000 genomes]
rs10792943	0.92[ASN][1000 genomes]
rs10792944	0.94[ASN][1000 genomes]
rs10898673	0.92[ASN][1000 genomes]
rs10898674	0.92[ASN][1000 genomes]
rs10898675	0.92[ASN][1000 genomes]
rs10898677	0.94[ASN][1000 genomes]
rs10898682	0.91[ASN][1000 genomes]
rs10898686	0.86[ASN][1000 genomes]
rs10898690	0.80[ASN][1000 genomes]
rs11235104	0.92[ASN][1000 genomes]
rs11235105	0.92[ASN][1000 genomes]
rs11235106	0.92[ASN][1000 genomes]
rs11235107	0.92[ASN][1000 genomes]
rs11235109	0.97[ASN][1000 genomes]
rs11235110	0.94[ASN][1000 genomes]
rs11235122	0.94[ASN][1000 genomes]
rs11235130	0.91[ASN][1000 genomes]
rs11235137	0.80[ASN][1000 genomes]
rs11501862	0.91[ASN][1000 genomes]
rs11501863	0.91[ASN][1000 genomes]
rs11604458	0.97[ASN][1000 genomes]
rs12281655	0.92[ASN][1000 genomes]
rs12294015	0.97[ASN][1000 genomes]
rs12295057	0.92[ASN][1000 genomes]
rs12295490	0.97[ASN][1000 genomes]
rs12361047	0.92[ASN][1000 genomes]
rs12363623	0.91[ASN][1000 genomes]
rs12363892	0.83[ASN][1000 genomes]
rs4245431	0.86[ASN][1000 genomes]
rs4453264	0.91[ASN][1000 genomes]
rs4471448	0.91[ASN][1000 genomes]
rs4536247	0.92[ASN][1000 genomes]
rs4943983	0.86[ASN][1000 genomes]
rs4944700	0.92[ASN][1000 genomes]
rs4944701	0.97[ASN][1000 genomes]
rs7122267	0.91[ASN][1000 genomes]
rs7125169	0.91[ASN][1000 genomes]
rs7125381	0.92[ASN][1000 genomes]
rs7938135	0.91[ASN][1000 genomes]
rs7951257	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87048400-87095400	Weak transcription	Aorta	Aorta
2	chr11:87055600-87063800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links