Variant report

Variant	rs10793501
Chromosome Location	chr10:44322100-44322101
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10899918	0.87[EUR][1000 genomes]
rs12219425	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2085798	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4948781	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4948783	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs729247	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs912804	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44314600-44323800	Weak transcription	Thymus	Thymus
2	chr10:44314800-44323200	Weak transcription	Gastric	stomach
3	chr10:44320000-44322400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr10:44320400-44322200	Enhancers	Ovary	ovary
5	chr10:44320800-44322200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:44321400-44323000	Weak transcription	Aorta	Aorta
7	chr10:44321800-44322200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:44321800-44322200	Enhancers	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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