Variant report

Variant	rs4948781
Chromosome Location	chr10:44335013-44335014
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10793501	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10899918	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899922	0.81[AFR][1000 genomes]
rs10899949	0.82[CHB][hapmap]
rs11238738	0.88[AFR][1000 genomes]
rs11238739	0.80[AFR][1000 genomes]
rs12219425	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2085798	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146640	0.94[ASN][1000 genomes]
rs4948782	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948783	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948784	0.80[AFR][1000 genomes]
rs4948785	0.80[AFR][1000 genomes]
rs729247	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912804	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4948781	LOC338579	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44332000-44337200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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