Variant report

Variant	rs11238738
Chromosome Location	chr10:44339418-44339419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:44338677-44339536	IMR90	lung:	n/a	chr10:44338946-44338957
2	MYC	chr10:44339313-44339660	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
LINC00619	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10793503	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899921	0.87[EUR][1000 genomes]
rs10899922	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238736	0.84[EUR][1000 genomes]
rs11238737	0.87[EUR][1000 genomes]
rs11238739	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12357341	0.86[EUR][1000 genomes]
rs1870636	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2085798	0.86[AFR][1000 genomes]
rs4948580	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4948781	0.88[AFR][1000 genomes]
rs4948784	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4948785	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs729247	0.88[AFR][1000 genomes]
rs748715	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7901526	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs912804	0.88[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11238738	LINC00840	cis	lung	GTEx

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44337400-44342400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:44338000-44339600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:44338200-44339800	Weak transcription	Lung	lung
4	chr10:44338200-44340200	Enhancers	Adipose Nuclei	Adipose
5	chr10:44338200-44340600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:44338200-44341200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:44338200-44341800	Enhancers	Osteobl	bone
8	chr10:44338200-44342200	Enhancers	Left Ventricle	heart
9	chr10:44338200-44342800	Enhancers	NHLF	lung
10	chr10:44338400-44339800	Weak transcription	Esophagus	oesophagus
11	chr10:44338400-44340200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:44338400-44342800	Enhancers	Fetal Muscle Leg	muscle
13	chr10:44338600-44339800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:44338600-44340200	Enhancers	HSMM	muscle
15	chr10:44338600-44340600	Weak transcription	Gastric	stomach
16	chr10:44338600-44341000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:44338800-44340400	Weak transcription	Stomach Mucosa	stomach
18	chr10:44338800-44340600	Weak transcription	Right Atrium	heart
19	chr10:44338800-44342200	Enhancers	HSMMtube	muscle
20	chr10:44339000-44340000	Enhancers	Fetal Stomach	stomach
21	chr10:44339000-44340600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:44339200-44340000	Weak transcription	Aorta	Aorta
23	chr10:44339200-44340600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:44339200-44340600	Weak transcription	Ovary	ovary
25	chr10:44339200-44340600	Weak transcription	Spleen	Spleen
26	chr10:44339200-44340800	Enhancers	Fetal Heart	heart
27	chr10:44339200-44341800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:44339200-44341800	Weak transcription	Colonic Mucosa	Colon
29	chr10:44339200-44342800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:44339200-44349400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:44339400-44339800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr10:44339400-44340000	Enhancers	Psoas Muscle	Psoas
33	chr10:44339400-44340600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:44339400-44341400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:44339400-44341600	Weak transcription	Fetal Lung	lung
36	chr10:44339400-44342800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:44339400-44342800	Enhancers	NHDF-Ad	bronchial

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