Variant report

Variant	rs1870636
Chromosome Location	chr10:44337215-44337216
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10793503	0.82[AMR][1000 genomes]
rs10899921	0.94[EUR][1000 genomes]
rs10899922	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10899929	0.94[ASN][1000 genomes]
rs10899937	0.87[ASN][1000 genomes]
rs10899945	0.81[ASN][1000 genomes]
rs11238736	0.90[EUR][1000 genomes]
rs11238737	0.94[EUR][1000 genomes]
rs11238738	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11238739	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238741	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11238766	0.81[ASN][1000 genomes]
rs12219425	0.86[AFR][1000 genomes]
rs12357341	0.93[EUR][1000 genomes]
rs17465611	0.90[ASN][1000 genomes]
rs4948783	0.85[AFR][1000 genomes]
rs4948784	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948785	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748715	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1870636	LINC00840	cis	lung	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44335200-44339400	Weak transcription	Psoas Muscle	Psoas
2	chr10:44335800-44337400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44337000-44339400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:44337200-44338200	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links