Variant report

Variant	rs17465611
Chromosome Location	chr10:44375711-44375712
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1009770	0.82[EUR][1000 genomes]
rs10899927	0.82[EUR][1000 genomes]
rs10899929	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899932	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10899937	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899944	0.80[EUR][1000 genomes]
rs10899945	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11238739	0.90[ASN][1000 genomes]
rs11238741	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238749	0.82[EUR][1000 genomes]
rs11238750	0.82[EUR][1000 genomes]
rs11238753	0.82[EUR][1000 genomes]
rs11238754	0.82[EUR][1000 genomes]
rs11238759	0.83[EUR][1000 genomes]
rs11238761	0.83[EUR][1000 genomes]
rs11238764	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11238766	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1468061	0.81[EUR][1000 genomes]
rs17464560	0.81[EUR][1000 genomes]
rs1870636	0.90[ASN][1000 genomes]
rs2031513	0.82[EUR][1000 genomes]
rs2169200	0.82[EUR][1000 genomes]
rs4948784	0.90[ASN][1000 genomes]
rs4948785	0.90[ASN][1000 genomes]
rs4948786	0.80[CEU][hapmap]
rs748715	0.90[ASN][1000 genomes]
rs7909314	0.81[EUR][1000 genomes]
rs881714	0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17465611	LINC00840	cis	lung	GTEx

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44360000-44392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44368400-44377200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:44373200-44375800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:44373200-44375800	Enhancers	Left Ventricle	heart
5	chr10:44373200-44375800	Enhancers	Right Atrium	heart
6	chr10:44373200-44376000	Enhancers	NHDF-Ad	bronchial
7	chr10:44373200-44376200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:44373400-44375800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:44373400-44375800	Enhancers	Adipose Nuclei	Adipose
10	chr10:44373400-44376000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
11	chr10:44373400-44376000	Enhancers	Right Ventricle	heart
12	chr10:44373400-44376000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:44373600-44376000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:44373600-44376000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr10:44374000-44377000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:44374400-44377400	Weak transcription	Osteobl	bone
17	chr10:44374400-44378400	Weak transcription	HUVEC	blood vessel
18	chr10:44374400-44383400	Weak transcription	NHLF	lung
19	chr10:44374600-44377200	Weak transcription	HSMMtube	muscle
20	chr10:44374800-44375800	Enhancers	Pancreas	Pancrea
21	chr10:44374800-44377200	Weak transcription	Fetal Heart	heart
22	chr10:44375200-44378400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:44375400-44375800	Enhancers	Spleen	Spleen
24	chr10:44375400-44376000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:44375600-44375800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:44375600-44376000	Enhancers	Rectal Smooth Muscle	rectum

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